GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002492-TA|BGIBMGA002492-PA|IPR006575|RWD
         (238 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.5  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   7.9  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 119 VKKEREERILAKQKADEEAELKR 141
           +  ER+E  L KQ+AD  A LK+
Sbjct: 202 IAAERKEARLEKQEADRYASLKQ 224


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 109  QEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQ 158
            ++W  E   +    REE  + +Q   EE E +  E  ++  E+  A+R++
Sbjct: 1076 RDWDTEREQRAASNREEAEIQQQLQREEDERRTEERRQLHNEANRAYRQR 1125


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.133    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,877
Number of Sequences: 2123
Number of extensions: 8723
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 238
length of database: 516,269
effective HSP length: 62
effective length of query: 176
effective length of database: 384,643
effective search space: 67697168
effective search space used: 67697168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)