GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002492-TA|BGIBMGA002492-PA|IPR006575|RWD
         (238 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.81 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 53 VFTYTSKYPD--ELPIIEIDNEENFDNIVDKE 82
          VFT   K  +  EL +  I NE+  DN++DK+
Sbjct: 16 VFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQ 47


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 179 LTGRELFLQDTTLNESDLKFLDDGDAVKVDESL 211
           LTGR LF+ D  L+++    +  G+  +  + L
Sbjct: 403 LTGRGLFISDIPLHDATRDVILVGEQARAQDGL 435


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 105 VSAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFE 143
           VSAG    + TW +V +  +   LA +K D+ +    F+
Sbjct: 426 VSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFK 464


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 105 VSAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFE 143
           VSAG    + TW +V +  +   LA +K D+ +    F+
Sbjct: 426 VSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFK 464


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 4    NYEQTSEVEALDSIYFGDMTV 24
            NY++ S VEA+ ++  G+M+V
Sbjct: 1042 NYDRDSLVEAVRAVQRGEMSV 1062


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/58 (24%), Positives = 24/58 (41%)

Query: 106 SAGQEWLNETWDKVKKEREERILAKQKADEEAELKRFEGTRVTVESFLAWRKQFEIDM 163
           SAG    N+TW  V +  +   LA QK +  +    F+      +  +      E+D+
Sbjct: 433 SAGFSQTNKTWLPVNENYKSLNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSLEVDV 490


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.133    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,441
Number of Sequences: 429
Number of extensions: 2955
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 238
length of database: 140,377
effective HSP length: 56
effective length of query: 182
effective length of database: 116,353
effective search space: 21176246
effective search space used: 21176246
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)