GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002491-TA|BGIBMGA002491-PA|IPR001849|Pleckstrin-like,
IPR000904|SEC7-like, IPR001605|Spectrin/pleckstrin-like
         (729 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    28   0.20 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    28   0.20 

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 0.20
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 166 LSEAVSNISSPDYQDQDDMFETGRECPRMELSDPSDS 202
           LS+A ++  S D  D D M   G+ CPR E S P D+
Sbjct: 98  LSQAPASQQSLDASDPDAM---GKWCPRREWSSPPDA 131


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 0.20
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 166 LSEAVSNISSPDYQDQDDMFETGRECPRMELSDPSDS 202
           LS+A ++  S D  D D M   G+ CPR E S P D+
Sbjct: 254 LSQAPASQQSLDASDPDAM---GKWCPRREWSSPPDA 287


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,050
Number of Sequences: 317
Number of extensions: 4821
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 2
length of query: 729
length of database: 114,650
effective HSP length: 62
effective length of query: 667
effective length of database: 94,996
effective search space: 63362332
effective search space used: 63362332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)