GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002491-TA|BGIBMGA002491-PA|IPR001849|Pleckstrin-like,
IPR000904|SEC7-like, IPR001605|Spectrin/pleckstrin-like
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    86   1e-17
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    79   2e-15
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    71   8e-13
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    62   3e-10
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    60   1e-09
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    55   4e-08
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    29   1.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   4.0  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    28   5.3  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    28   5.3  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   9.2  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   9.2  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 315 VDIPSAERLAKRLYHLDGFKKSDVSRHLSKNNEFSRAVAEEYVKHFEFANXXXXXXXXXX 374
           VDI   + +A+ L+  DG  K+ +  +L + +E S +V  E++    F N          
Sbjct: 736 VDINDPKAIAEFLFRADGIDKTTLGDYLGEGDEKSISVMHEFIDCLSFINLKFVDALRRL 795

Query: 375 XXXXXXSGETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQ 434
                  GE Q+ +R+++ FS RY++ NP  F + D  + L  +I+LLNTDLH       
Sbjct: 796 LQCFRLPGEAQKIDRIMLKFSERYMKENPSAFANADTAYILAYSIILLNTDLHS-PRIKN 854

Query: 435 RMSCAEFIDNLADLNDGDNFPRDTLKHLYHAIRSQPLQWALDTESAVL 482
           +M+  +FI N   +NDG +   D L  +Y  I    +    D E A +
Sbjct: 855 KMTKEDFIKNNRGINDGADLDEDYLGFVYDDILKNEIAMKDDQELAAI 902


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 323 LAKRLYHLDGFKKSDVSRHLSKNNEFSRAVAEEYVKHFEFANXXXXXXXXXXXXXXXXSG 382
           +AK L   +G  K+ +  +L + N+ + A+   +V H  F +                 G
Sbjct: 735 IAKFLISTEGLDKAVLGEYLGEGNDENIAIMHSFVDHMSFNDIPFVNALRSFLQKFRLPG 794

Query: 383 ETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAEFI 442
           E Q+ +R ++ F+ +Y++ N G F + D  + L  +I++LNTDLH       RM+C +FI
Sbjct: 795 EAQKIDRFMLKFAEKYIDDNLGVFKNADTAYILAYSIIMLNTDLHS-PQVKNRMTCQDFI 853

Query: 443 DNLADLNDGDNFPRDTLKHLYHAIRSQPL 471
            N   ++DG N     L  +Y  I+   +
Sbjct: 854 KNNRGVDDGANLSDSFLTEVYEEIQKNEI 882


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 70.5 bits (165), Expect = 8e-13
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 352 VAEEYVKHFEFANXXXXXXXXXXXXXXXXSGETQERERVLVHFSRRYLECNPGTFNSQDA 411
           +   ++  F+F                   GE+Q  ERVL  FS  Y+  NP + +S+DA
Sbjct: 612 ILNAFISAFDFKGKRIDEALRLLLQSFRLPGESQLIERVLETFSHYYMSANPDSMSSKDA 671

Query: 412 VHTLTCAIMLLNTDLHGCG-GALQRMSCAEFIDNLADLNDGDNFPRDTLKHLYHAIRSQP 470
              L+ +I++LNTD H     + +RM+  +F  N+  +NDG +F R+ L  +Y AI+   
Sbjct: 672 AFVLSYSIIMLNTDQHNPNIKSQRRMTLDDFCRNVRGVNDGQDFDRNFLSEIYKAIKENE 731

Query: 471 L 471
           +
Sbjct: 732 I 732


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 5/88 (5%)

Query: 383 ETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAEFI 442
           ETQ+ +RV+  FS+RY ECNPG F+SQD  + L  ++M+L+TD+        +M+  EFI
Sbjct: 423 ETQQIDRVINAFSKRYFECNPGMFSSQDQCYILVFSLMMLHTDVFNSNNK-HKMTKQEFI 481

Query: 443 DNLADLNDGDNFPRDTLKHLYHAIRSQP 470
            NL D+   D    + +++ Y  I   P
Sbjct: 482 -NLCDI---DELAPEIMEYYYDNITFTP 505


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 342 LSKNNEFSRAVAEEYVKHFEFANXXXXXXXXXXXXXXXXSGETQERERVLVHFSRRYLEC 401
           L  +  +++AV + Y+  ++F N                 GETQE +  L  FS ++   
Sbjct: 359 LVTDKPYNKAVLKHYISLYDFENTDILQSLRMICGNLYVHGETQELDHFLGEFSNQWCRT 418

Query: 402 NP-GTFNSQDAVHTLTCAIMLLNTDLHGCG-GALQRMSCAEFIDN 444
           NP G F +   VH++  +++LLNTDLH     A +RMS  +F++N
Sbjct: 419 NPKGLFCNPQIVHSIAFSLLLLNTDLHIAELSASERMSRNQFVEN 463


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 383 ETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAEFI 442
           ETQ+ +RVL  FS +Y  CNP  ++S D  + LT ++M+L+TD        Q+M+ AEFI
Sbjct: 339 ETQQIDRVLSTFSDQYFHCNPDLYDSSDECYILTFSLMILHTDFFNIHNR-QKMTRAEFI 397

Query: 443 DN 444
            N
Sbjct: 398 SN 399


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 192 PRMELSDPSDSDSTILVSEPCHKRAKSNSSYSNEHGSDVTLNGDNNDHRIVIQVKGPDK 250
           P   +  P   DS+   S P H+R  S+S++S+    D+     N+  R V    GP++
Sbjct: 484 PDFAIGSPMSQDSSNY-SSPLHRRKASDSNFSDPRFDDLKYLSPNSSPRFVAS-DGPNR 540


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 512  YKKGYVMRKCCVDPNGKRTPFGRRGWKMFYCTLRDLVLYLHKDEHGFRRSQMSDN-LHNA 570
            +++G +  K  V     R   G   WK  YC +    L  +K +H    +  + + +H  
Sbjct: 1045 HRRGMISYKKMVLSKNNRWVAGY--WKKKYCIVDSGKLIFYKSDHLDPNACSNVSPIHRE 1102

Query: 571  IRIHHALATKAID---YTKKQHVFRLQTADQAEFLFQTSDSKELCSWVETINF 620
              +   LA+  +     + + +VF L       +LF+      +  W+ ++NF
Sbjct: 1103 FGLQSCLASPNLPPSINSNRNNVFYLNIPGNECYLFEAPSVLAMNEWIHSLNF 1155


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 310 YSPKAVDIPSAERLAKRLYHLDGFKKSDVSRHLSKNNEFSRAVAEEYVKHFEF 362
           ++P A+D   AERL+ R YH +G     V R L  N+   R V +E +++  F
Sbjct: 13  FAPHALDTSEAERLS-REYHKNGPYNHVVIRPLI-NDTLLRNVRKELMENIHF 63


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 663 DRIARLEEELAQLKRQARDNSSHTWDKDHYLIYEIKRYRT 702
           +R  +LE +L  LK + +D  S  W+++  L+  IK+ +T
Sbjct: 372 ERREKLESKLTDLKEE-QDKLSAAWEEERKLLDSIKKAKT 410


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 163 DMSLSEAVSNISSPDYQDQDD--MFETGRECPRMELSDPSDSDSTILVSEPCHKRAKSNS 220
           ++ L + +S ISSP Y   DD       +  P+  +++  ++ ++   SE  +K  + NS
Sbjct: 606 NLQLEDEISEISSPSYSSDDDRKTISETQPAPKQNINEEFENSTSTDGSE-TNKNEQGNS 664


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 642 RPLLPSSHSKLSMRDQLRDHEDRIARLEEELAQLKRQARDNSSHTWDKDHYLIYE 696
           RPLLPS  S+  + D L+   D+ A   ++L         +  HT+D+++   ++
Sbjct: 487 RPLLPSEESEYCIADVLQ-FPDKDALEPQKLILKGPNVESSLGHTYDRNYEFSFD 540


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,267
Number of Sequences: 5004
Number of extensions: 101950
Number of successful extensions: 316
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 18
length of query: 729
length of database: 2,362,478
effective HSP length: 78
effective length of query: 651
effective length of database: 1,972,166
effective search space: 1283880066
effective search space used: 1283880066
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)