GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002491-TA|BGIBMGA002491-PA|IPR001849|Pleckstrin-like,
IPR000904|SEC7-like, IPR001605|Spectrin/pleckstrin-like
         (729 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.33 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            26   3.1  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    25   5.4  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   9.4  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 644 LLPSSHSKLS-MRDQLRDHEDRIARLEEELAQLKR-QARDNSSHTWDKDHYLIYEIKRYR 701
           LL  S  KL  + + LR  EDR+  LEEE  +L   Q  D +  T +   Y+IYE +   
Sbjct: 178 LLRESEGKLEKISEYLRTIEDRLKTLEEEKEELSEYQKWDKARRTLE---YVIYETELKE 234

Query: 702 T 702
           T
Sbjct: 235 T 235


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 383 ETQERERVLVHFSRRYLECNPGTFNSQDAVHTLTCAIMLLNTDLHGCGGALQRMSCAE-F 441
           E ++RE  L+H  +  +  +      +D +HTL  A+ L+   +   GG+++   C   F
Sbjct: 369 EAKDREEQLLHEKQNLIRISE---LEKDYLHTLDGALELVRALVEPAGGSIELEECERIF 425

Query: 442 IDNLAD 447
           +   AD
Sbjct: 426 VRLYAD 431


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 645 LPSSHSKLSMRDQLRDHEDRIARLEEELAQLK 676
           LPSS   L +R  L +   +   L+E+L QL+
Sbjct: 32  LPSSPEMLILRQNLEETRKKNESLQEQLTQLR 63


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 187 TGRECPRMELSDPSDSDSTILVSEPCHKRAKSNSSYS--NEHGS 228
           TGR     + S  S  DS+  +S  C    + N+S+S  + HGS
Sbjct: 551 TGRGWSSPQASPVSGYDSSTSISSVCSGPEEDNASHSSASSHGS 594


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,831
Number of Sequences: 2123
Number of extensions: 21056
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 6
length of query: 729
length of database: 516,269
effective HSP length: 69
effective length of query: 660
effective length of database: 369,782
effective search space: 244056120
effective search space used: 244056120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)