GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002490-TA|BGIBMGA002490-PA|IPR001478|PDZ/DHR/GLGF
         (78 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    25   1.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   2.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    24   2.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   2.8  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    23   4.9  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    22   8.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    22   8.5  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    22   8.5  

>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex
          subunit Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 19 FSLLGEAGLPHVIYEIEENSPAA 41
          + L+   GLP V YE++  SP A
Sbjct: 7  YELIELMGLPKVTYELDSKSPNA 29


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 19   FSLLGEAGLPHVIYEIEENSPAARSGEVSMHSILWISQTKII--HYLRSRIDMTFKYI 74
            F++L   GLP   +E   N PA  +  +    +LW     I+  ++L +    ++KY+
Sbjct: 2114 FAILLIFGLPDYYWESPGNIPAFYTALLRRKLVLWFFVATILQNYWLSTLYGRSWKYL 2171


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
          protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 24 EAGLPHVIYEIEENSPAARSGEVSMHSILWISQTKIIH 61
          E  L   I+E   NSP  RS  V+ ++ L I +    H
Sbjct: 38 ENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFH 75


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 28  PHVIYEIEENSPAARSGEVSMHSILW 53
           P   Y + EN P+   G+VS   + W
Sbjct: 82  PFTGYSVVENLPSIYEGDVSPEELRW 107


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 45  EVSMHSILWISQTKIIHYLRSRIDMTFK 72
           E  ++ I W  +T   H+L S  D T K
Sbjct: 89  EEKINKIRWCKRTNRAHFLLSTNDKTIK 116


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 19  FSLLGEAGLPHVIYEIEENSP 39
           F L G++ LP V+Y   + +P
Sbjct: 196 FDLQGDSILPEVVYSATKGNP 216


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 9   LNRSDNLGFGFSLLGEAGLPHVIYEIEENSPAARSGEVS 47
           LN  DN+ F      +  L HV  EI  N P A  GE++
Sbjct: 724 LNEKDNVVFE-----DKTLQHVASEIVPNLPPADVGELN 757


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 47  SMHSILWISQTKIIHYLRSRIDMTFK 72
           S  S+L ++  ++I YL+  I + FK
Sbjct: 821 SQESLLKLNMDRLISYLKEDIFLAFK 846


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,117
Number of Sequences: 5004
Number of extensions: 11852
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 78
length of database: 2,362,478
effective HSP length: 58
effective length of query: 20
effective length of database: 2,072,246
effective search space: 41444920
effective search space used: 41444920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)