GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002490-TA|BGIBMGA002490-PA|IPR001478|PDZ/DHR/GLGF
         (78 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095...    25   5.8  
05_05_0126 + 22574191-22575567                                         25   5.8  
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700...    25   5.8  

>06_03_0508 -
           21607706-21608863,21608943-21609090,21609411-21609523,
           21609612-21609705,21609841-21609950,21610093-21610257,
           21611660-21611800
          Length = 642

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 38  SPAARSGEVSMHSILWISQTKIIHYLRSRIDMTFK 72
           SPA R G ++   +LW+    +  Y  SR+   FK
Sbjct: 371 SPANRGGLMTAMVLLWVFMGVLAGYTSSRLYKMFK 405


>05_05_0126 + 22574191-22575567
          Length = 458

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 11  RSDNLGFGFSLLGEAGLPHVIYEIEENSPAARSGEVS 47
           R D    GF LL +  +   IYE +   P  R  EV+
Sbjct: 69  RPDPKQLGFFLLSDESMFQAIYEAQARRPPERREEVA 105


>02_04_0513 -
           23569212-23569675,23569759-23569801,23569888-23570000,
           23570099-23570158,23570472-23570541,23570887-23570951,
           23571548-23571685,23571764-23573015
          Length = 734

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 1   MADERLVVLNRSDNLGF-GFSLLGEAGLPHVIYEIEENSP 39
           M  ER V +N  DNL      +LG A   H++  ++E SP
Sbjct: 646 MQMERTVEIN--DNLHLKDLEMLGTATTEHIVSSVDETSP 683


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,795
Number of Sequences: 37544
Number of extensions: 71448
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 14,793,348
effective HSP length: 57
effective length of query: 21
effective length of database: 12,653,340
effective search space: 265720140
effective search space used: 265720140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)