GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002490-TA|BGIBMGA002490-PA|IPR001478|PDZ/DHR/GLGF
         (78 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075457-1|AAL68270.1| 1058|Drosophila melanogaster RE14068p pro...    30   0.44 
AE014298-828|AAF46109.3| 1058|Drosophila melanogaster CG14447-PA...    30   0.44 
BT030199-1|ABN49338.1|  473|Drosophila melanogaster IP18016p pro...    28   1.4  

>AY075457-1|AAL68270.1| 1058|Drosophila melanogaster RE14068p
           protein.
          Length = 1058

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 7   VVLNRSDNLGFGFSLLGEAGLPHVIYEIEENSPAARSGEVSMHSILW-ISQTKIIHY 62
           V L R+   G G S+ G +    VI +++  SPA RSG +    IL  + Q  + H+
Sbjct: 574 VKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHF 630


>AE014298-828|AAF46109.3| 1058|Drosophila melanogaster CG14447-PA
           protein.
          Length = 1058

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 7   VVLNRSDNLGFGFSLLGEAGLPHVIYEIEENSPAARSGEVSMHSILW-ISQTKIIHY 62
           V L R+   G G S+ G +    VI +++  SPA RSG +    IL  + Q  + H+
Sbjct: 574 VKLLRAGKCGLGLSVSGSSHGGLVISDVKMGSPAHRSGSLRSGDILLAVDQHPVQHF 630


>BT030199-1|ABN49338.1|  473|Drosophila melanogaster IP18016p
           protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 5   RLVVLNRSDNL--GFGFSLLG--EAGLPHVIYEIEENSPAARSGEVSMHSILWISQT 57
           R V ++R   +  GFG  + G  ++GL   I  IEENS A R+G     +IL ++ T
Sbjct: 258 RTVSMSRDQQIDHGFGICVKGGKDSGLGVYISRIEENSVAERAGLRPGDTILEVNGT 314


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,738
Number of Sequences: 52641
Number of extensions: 113628
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 3
length of query: 78
length of database: 24,830,863
effective HSP length: 58
effective length of query: 20
effective length of database: 21,777,685
effective search space: 435553700
effective search space used: 435553700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)