GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002490-TA|BGIBMGA002490-PA|IPR001478|PDZ/DHR/GLGF
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   5.4  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 17  FGFSLLGEAGLPHVIYEIEENSPAARSGEVSMHSILWISQTKII 60
           FG+  +   G    +Y++E+ SP    G     +  W  + K +
Sbjct: 283 FGYQDMRNRGNNFPVYQVEKRSPFRYLGARGKKNPRWEFRGKFV 326


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query: 37 NSPAARSGEVSMHSILWISQTKIIHYLRSRIDMTFKYI 74
          N PA     +  H +++      +HYL + + + F ++
Sbjct: 24 NVPAEELIHIPEHWLVYPEPNPSLHYLLALLYILFTFL 61


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,016
Number of Sequences: 429
Number of extensions: 651
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.5 bits)
S2: 36 (18.6 bits)