Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002489-TA|BGIBMGA002489-PA|undefined
(140 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.35
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 27 1.4
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 3.3
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 4.4
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 25 4.4
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 4.4
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 4.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 24 7.6
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 24 7.6
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 28.7 bits (61), Expect = 0.35
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 35 DDKDGVSRSEVFDM--LHSRDDSPDNFDLPTFPEDVEDM-KSEVPGLPDSQAEFLQVADS 91
D+ D S E+ D +++RDD+ D F + PE++ED+ +S + +AE +
Sbjct: 90 DEDDETSHQELSDNSEMNNRDDADDEFLGFSGPENLEDVDESSAEDVSGDEAEIMNEEGQ 149
Query: 92 EVRK 95
++ +
Sbjct: 150 QIEQ 153
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 1.4
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 27 AIMSKLLVDDKDGVSRSEVFDMLHSRDDSPDNFDLPTFPEDVEDMKSEVPGLPDSQA-EF 85
A++S D K + +E D+ H + SPD L PED+ K VP S+
Sbjct: 354 AVISNRTSDKKTRSTVAEEDDITHL-NISPDRLYLNKKPEDLNFWKKSVPETDKSRVLNL 412
Query: 86 LQVADSEVRKDS 97
L +A+ + D+
Sbjct: 413 LAMAEDDEYDDT 424
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 25.4 bits (53), Expect = 3.3
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 82 QAEFLQVADSEVRKDSQKLRRPAKREEPVGLAAGIMVIVTC-SIVFVAYSALII 134
QA+ L D+ + + KLRR KR + +A+ C +++ + AL++
Sbjct: 167 QADLLDTLDNSIETTNSKLRRGMKRLKDFTIASADSKSGCCITVLIIILIALLV 220
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.0 bits (52), Expect = 4.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 3 NRDESSALAKEVKDNSRYKTLEANAIMS 30
N E+ A+AKE+ +N R K+ +++
Sbjct: 151 NAAETDAMAKEIDENERLKSSSGKIVLT 178
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 4.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MTNRDESSALAKE-VKDNSRYKTLEANAIMSKLLVDDKDGVSRSEVFDM 48
+ D L KE +KD S K+ E ++ +D K V+ +EV M
Sbjct: 51 LKEEDLQKELQKESIKDESSAKSSETENVLEFATLDSKRNVNDTEVESM 99
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 4.4
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 62 PTFPEDVEDMKSEVPGLPDSQAEFL--QVADSEVRKDSQKLRRPAKREE 108
P +++E + +E+P P Q FL Q SE ++Q +PA E
Sbjct: 216 PVQTKELESLFAELPTEPPKQTRFLKSQQPTSEPNVETQVEEQPALENE 264
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 4.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 33 LVDDKDGVSRSEVFDMLHSRDDSPDNFDLP-TFPEDVEDMKSEVPGLPDS 81
L +++G S E + H + + D F P T P ++ +K VP LP++
Sbjct: 186 LESEREGNSGEEE-EEFHGFESNSDEFHQPETKPIRMDPLKPAVPSLPNA 234
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 21 KTLEANAIMSKLLVDDKDGVSRSE 44
KT E +SKLL+DD++ +S E
Sbjct: 570 KTPEGLVSISKLLLDDREHLSHDE 593
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 60 DLPTFPEDVEDMKSEVPGLPDSQAEFLQVADSEV 93
D P E +ED S G+ + +F VA+S+V
Sbjct: 88 DRPFLSEYIEDHHSSCNGIKPPKPQFEPVANSQV 121
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,481
Number of Sequences: 5004
Number of extensions: 24231
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 10
length of query: 140
length of database: 2,362,478
effective HSP length: 66
effective length of query: 74
effective length of database: 2,032,214
effective search space: 150383836
effective search space used: 150383836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)
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