GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002489-TA|BGIBMGA002489-PA|undefined
         (140 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   8.6  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 84  EFLQVADSEVRKDSQKLRRPAKREEPVGLAAGIMVIVTCSIVFVAYSALIIWRRIYL 140
           EFLQ  DS +R+D   +  P      V    G++  V+  +V     ++      YL
Sbjct: 36  EFLQQEDSSIRRDPLYIVLPITVIYAVIFVTGLVGNVSTCVVIARNKSMHTATNYYL 92


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 63  TFPEDVEDMKSEVPGLPD 80
           +FP+ V D   E+ G PD
Sbjct: 390 SFPDSVSDYPLELKGSPD 407


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/35 (22%), Positives = 21/35 (60%)

Query: 4   RDESSALAKEVKDNSRYKTLEANAIMSKLLVDDKD 38
           R +++ + K++ ++++ + L     +SKL   +KD
Sbjct: 232 RTDTAGVIKKLTEDTQERRLSNKGSISKLQFHNKD 266


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,950
Number of Sequences: 429
Number of extensions: 1366
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 140
length of database: 140,377
effective HSP length: 52
effective length of query: 88
effective length of database: 118,069
effective search space: 10390072
effective search space used: 10390072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)