GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002488-TA|BGIBMGA002488-PA|IPR000994|Peptidase M24,
catalytic core
         (716 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   1.4  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   1.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   2.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   7.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 167 RTISEWIVDRLGRKGRVGGDARLTS 191
           ++I E+ V R+GR GRVG   + TS
Sbjct: 488 KSIDEY-VHRIGRTGRVGNKGKATS 511


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 336 SDYTAIYDELRRSSESKILIPAAGTFQRGASAAIAQSVP-LSKRVFLLSPIIY 387
           S+Y  +  E+R+  +   LI  A       S  I+  VP LSK + +++ + Y
Sbjct: 155 SNYVTLIKEMRKEFDKNGLILTAAVAAASGSVDISYDVPALSKYLDIINVMAY 207


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 484 GGQYDEGTTVVTRTVHYGTPSREERRAYTTVLRAVAALSAFTAPST 529
           GGQ  E   +   + HY TP+  E   +  VL  +  +  +  PST
Sbjct: 402 GGQMFEAP-IPNVSPHYVTPTPPEAPLFQNVLPPIGGMMNWNMPST 446


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 305 VRVFAPPGKLSMPVRKALDVYNCYTNNCTRVSDYTAIYDELRRSSE 350
           +R F  P K +  VR  L + N Y   C R S  T   ++L R  E
Sbjct: 523 IRNFPVPQK-TKHVRAFLGLCNFYRKFCARYSAATQDLNKLLRKGE 567


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,553
Number of Sequences: 317
Number of extensions: 6468
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 716
length of database: 114,650
effective HSP length: 62
effective length of query: 654
effective length of database: 94,996
effective search space: 62127384
effective search space used: 62127384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)