GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002488-TA|BGIBMGA002488-PA|IPR000994|Peptidase M24,
catalytic core
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...   259   8e-70
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    45   4e-05
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    33   0.14 
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    30   1.3  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   3.9  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    28   5.2  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score =  259 bits (635), Expect = 8e-70
 Identities = 186/625 (29%), Positives = 297/625 (47%), Gaps = 43/625 (6%)

Query: 68  INTSVPLGRLRTALRNSAYLRKDTLLDAFIVFFSDEHXXXXXXXXXXXXXYISGWDGAGT 127
           ++T   L +LR  ++   Y    TL   ++V   D H             +ISG+DG+  
Sbjct: 3   VHTGNRLNKLRELMKERGY----TL---YVVPSEDAHSSEYTCDADARRAFISGFDGSAG 55

Query: 128 AAVLADGGAAIWVPSGDVHNARATLSCAWEVLDGDDPSQRTISEWIVDRLGRKGRVGGDA 187
            AV+ +  AA++      + A   L   W ++        T  E+         +VG D+
Sbjct: 56  CAVIGETSAALFTDGRYFNQASQQLDENWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDS 115

Query: 188 RLTSVVEWQTISSSLH-REGLLLI-DVPTLVDQLWNDEVDPPRRRPEFSKIVANKHQMEY 245
            L +    + +  SL  + G +L+ D   LVD +W       R +    K++    +++Y
Sbjct: 116 SLITFPAAKALRESLFLKSGAVLVGDHDNLVDIVWGAS----RPKEPLEKLIVQ--EIKY 169

Query: 246 VGMSWREKVSAVRNELRAVGAEAIIITALDEVAWLLNVRGRDVPYAPLLKAFVIVSLRDV 305
            G+   EK+  +R  ++    EA +++ LDEVAWL N+RG DVPY P+  A+ +V+L + 
Sbjct: 170 AGLGVDEKLHNLREAMKEQKIEAFVVSMLDEVAWLYNLRGADVPYNPVFFAYSLVTLDEA 229

Query: 306 RVFAPPGKLSMPVRKALDVYNCYTNNCTRVSDYTAIYDELRRSSESKILIPAAGTFQRGA 365
            ++    K++  V K LD +        ++  Y  ++ + + S+ ++I I +        
Sbjct: 230 FLYVDERKVTPEVSKHLDGF-------VKILPYDRVFSDAKNSNLTRIGISSK------T 276

Query: 366 SAAIAQSVPLSKRVFLLSPIIYLKAQKNEAEAKGMRKAHLRDAVAMCTLFSYLEN--KSG 423
           S  IA S   +K + +LSPI   K  KN+AE KGM++ H+RD  A+   F++L+    SG
Sbjct: 277 SWCIATSFGETKVMPILSPISQAKGIKNDAELKGMKECHIRDGCALVEYFAWLDEYLNSG 336

Query: 424 --LSEMSVQTTVDITRETQAGYVGPAMQTRVAYGPSAVEPEYRPNNATNRRIYKNSTLVI 481
             ++E    T ++  R     ++G + +T  + GP+     Y P    +  I      + 
Sbjct: 337 NKINEFDAATKLEQFRRKNNLFMGLSFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLC 396

Query: 482 RSGGQYDEGTTVVTRTVHYGTPSREERRAYTTVLRAVAALSAFTAPSTLPAAHADPVARA 541
            SG QY +GTT VTRT H+G PS  ER+  T  L+   AL+    P        D +AR 
Sbjct: 397 DSGAQYKDGTTDVTRTWHFGEPSEFERQTATLALKGHIALANIVFPKGTTGYMIDVLARQ 456

Query: 542 PLWAADQDYPHPTGHGVGAALNRREDPVVIDYRQDTNLHTLREGYFITCEPGWYEPGKFG 601
            LW    DY H TGHGVG+ LN  E PV I  R+  N   L+ G   + EPG+YE G FG
Sbjct: 457 YLWKYGLDYLHGTGHGVGSFLNVHELPVGIGSREVFNSAPLQAGMVTSNEPGFYEDGHFG 516

Query: 602 IRLGNVVEVIGKPNE-------YLGFREATLLPYEPKLIDKNMLTEYEITWLNGYNDRIR 654
            R+ N V +     E       YLG ++ TL P+  KLID ++L+  E+ +LN Y+  + 
Sbjct: 517 YRVENCVYITEVNTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVY 576

Query: 655 KIVGPELMSQGLTDVYYWMMNKTAP 679
             + P L          W+   T+P
Sbjct: 577 TTLSPMLS----VSAKKWLSKHTSP 597


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 24/259 (9%)

Query: 380 FLLSP-IIYLKAQKNEAEAKGMRKAHLRDAVAMCTLFSYLENKSGLSEMSVQTTVDITRE 438
           F +SP +  L+  K+ AE   M + ++    A+ ++   +  K G++E  +   +++   
Sbjct: 209 FGVSPRVASLREIKSPAEVDIMSRVNIATVAAIRSVQPCI--KPGITEKELAEVINMLFV 266

Query: 439 TQAGYVGPAMQTR--VAYGPSAVEPEYRPNNATNRRIYKNSTLVIRSGGQYDEGTTVVTR 496
               Y G  +Q    V +G  A  P   P+N   RR+ K+  +++  G       +  TR
Sbjct: 267 ----YGGLPVQESPIVLFGERAAMPHGGPSN---RRLKKSEFVLMDVGTTLFGYHSDCTR 319

Query: 497 TV--HYGTPSREERRAYTTVLRA-VAALSAFTAPSTLPAAHADPVARAPLWAAD--QDYP 551
           TV  H    +    + +  V  A  A +   +  S    A  D  AR  +  A   + + 
Sbjct: 320 TVLPHGQKMTERMEKLWNLVYDAQTAGIQMLSHLSNTSCAEVDLAARKVIKDAGYGEYFI 379

Query: 552 HPTGHGVGAALNRREDPVVIDYRQDTNLHTLREGYFITCEPGWYEPGKFGIRLGNVVEVI 611
           H  GHG+G  L   E   +    + T    +++G   T EPG Y P + GIR+ + V   
Sbjct: 380 HRLGHGLG--LEEHEQTYLNPANKGT---PVQKGNVFTVEPGIYIPDEIGIRIEDAVLAS 434

Query: 612 GKPNEYLGFREATLLPYEP 630
             P     FR  +  PYEP
Sbjct: 435 DVPILLTNFRAKS--PYEP 451


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 16/63 (25%)

Query: 183 VGGDARLT----SVVEWQTISSSLHREGLLLIDVPTLVDQLWNDEVDPPRRRPEFSKIVA 238
           VGG  RLT    S+ EW+ I+            +P L D+ WN E +  ++ PEF K+  
Sbjct: 115 VGGITRLTESGLSITEWKPITGV----------IPPLTDEQWNQEFELYKKSPEFEKL-- 162

Query: 239 NKH 241
           N H
Sbjct: 163 NSH 165


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 550 YPHPTGHGVGAALNRREDPVVIDYRQDTNLHTLREGYFITCEPGWYEPGKFG 601
           YPH  GH +G  ++        D   +     LR+   IT EPG Y P + G
Sbjct: 401 YPHSIGHEIGLEIH--------DCSTNNGYQPLRKNQVITIEPGLYVPEEDG 444


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 389 KAQKNEAEAKG-MRKAHLRDAVAMCTLFSYLENKSGLSEMSVQTT 432
           K QK E + KG   +A+  DAV   T+  +L+N S LS     TT
Sbjct: 271 KMQKKECDKKGKFFEAYAVDAVLCYTVAFHLQNLSNLSRNHPATT 315


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 192 VVEWQTISSSLHREGLLLIDVPTLVDQLWND-EVDPPRRRPEFSKIVANKHQMEYVGMSW 250
           V+ + TISS   ++GL L D+ T + +  ++ E+ P  +     ++   +H+M + G S 
Sbjct: 262 VIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSF-GCSE 320

Query: 251 REKVSAV 257
           + ++SA+
Sbjct: 321 KIQLSAM 327


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,819
Number of Sequences: 5004
Number of extensions: 123410
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 7
length of query: 716
length of database: 2,362,478
effective HSP length: 78
effective length of query: 638
effective length of database: 1,972,166
effective search space: 1258241908
effective search space used: 1258241908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)