GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002488-TA|BGIBMGA002488-PA|IPR000994|Peptidase M24,
catalytic core
         (716 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   2.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   3.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   3.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   8.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   8.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 174 VDRLGRKGRVGGDARLTS 191
           V R+GR GRVG   R TS
Sbjct: 536 VHRIGRTGRVGNRGRATS 553


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 349 SESKILIPAAGTFQRGASAAIAQSVPLS 376
           SE+KI  P  G+F    +A   +  PLS
Sbjct: 296 SEAKIFPPTPGSFNFSMAALATEHTPLS 323


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 501 GTPSREERRAYTTVLRAVAALSAFTAPSTLPAAHA 535
           G  +R+E +A +T     A ++   A +TLPAA A
Sbjct: 199 GGAARDESKAGSTDASTPATVTTTGATTTLPAASA 233


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 125 AGTAAVLADGGAAIWVP 141
           AGT AV+  G  A W+P
Sbjct: 305 AGTLAVVVGGFVACWLP 321


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 211 DVPTLVDQLWNDEVDPPRRRPE 232
           D  TL DQ+ N  V P   RP+
Sbjct: 206 DKATLADQIKNGIVSPQEERPK 227


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 211 DVPTLVDQLWNDEVDPPRRRPE 232
           D  TL DQ+ N  V P   RP+
Sbjct: 201 DKATLADQIKNGIVSPQEERPK 222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,955
Number of Sequences: 429
Number of extensions: 8230
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 716
length of database: 140,377
effective HSP length: 63
effective length of query: 653
effective length of database: 113,350
effective search space: 74017550
effective search space used: 74017550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)