Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002487-TA|BGIBMGA002487-PA|IPR001382|Glycoside
hydrolase, family 47
(83 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 68 1e-13
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 50 3e-08
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 1.8
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 24 2.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 24 2.4
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 23 5.6
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 23 7.3
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb... 22 9.7
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 22 9.7
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 22 9.7
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T... 22 9.7
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 68.1 bits (159), Expect = 1e-13
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 13 DSELSVFETTIRFVGGLLSCYALTGDTIFRDKAAEVADTLLPVFETPTGLPYALINPSTN 72
D E+SVFETTIR +GGLLS Y L+ D ++ D+A ++AD LL + T TGLP + +N T
Sbjct: 123 DEEVSVFETTIRILGGLLSSYHLSQDKLYLDRAVDLADRLLAAYNTSTGLPRSNVNLGTR 182
Query: 73 VRR 75
R
Sbjct: 183 KSR 185
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 50.4 bits (115), Expect = 3e-08
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 11/68 (16%)
Query: 12 QDSELSVFETTIRFVGGLLSCYALTGDT-------IFRDK----AAEVADTLLPVFETPT 60
+D+++ VFE TIR +GGLLS + + +++ + A E+A+ LLP F TPT
Sbjct: 122 RDTKVQVFEATIRILGGLLSSHIFASEEKYGFQIPLYKGELLTLATELAERLLPAFRTPT 181
Query: 61 GLPYALIN 68
G+P+A IN
Sbjct: 182 GIPFARIN 189
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 38 DTIF-RDKAAEVADTLLPVFETPTGLPYALINPSTNV 73
D++F + AA+ T++P TP G P +P+ V
Sbjct: 233 DSLFGKRSAAQAMATVVPSVSTPGGTPPRFASPALTV 269
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 32 CYALTGDTIFRDKAAEVADTL 52
C L GD +FR A E+ D L
Sbjct: 19 CVYLAGDLVFRPNAIELFDEL 39
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 47 EVADTLLPVFETPTGLPYALINPSTNVRRVFFI 79
E +P PT PYA+I V R+++I
Sbjct: 33 ETCSNFVPRAGIPTFSPYAVIKNFDEVNRMYYI 65
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 23.0 bits (47), Expect = 5.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 59 PTGLPYALINPSTN 72
P+GLPY++ PS N
Sbjct: 203 PSGLPYSVTIPSNN 216
>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 22.6 bits (46), Expect = 7.3
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 11 LQDSELSVFETTIRFVGGLLSCYALTGDTIFRDKAAEVADTLLPVFETPTGLPY 64
L DS +V ++ I+ + G+LS + + I + A++ T L + G+P+
Sbjct: 332 LFDSSKTVLDS-IQILTGVLSTLTVNPENIAKSLTADMLATDLAEYLVRKGVPF 384
>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 250
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 23 IRFVGGLLSCYALTGDTIF 41
I F GG ++CY L T+F
Sbjct: 206 IGFFGGAIACYFLWERTMF 224
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 5 IETVLELQDSELSVFETTIRFVGGLLSCYALTG 37
+ TV++LQDS + + E ++ + ++L+G
Sbjct: 79 LTTVMDLQDSLVQLHEKLVQSAHLMTKIFSLSG 111
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 31 SCYALTGDTIFRDKAAEVADTLLPVFETPTGLPYALINPS 70
+CY++ ++ A +++++LP P +++I PS
Sbjct: 409 TCYSVAAGG-WQSAALAISESVLPEVNVPPITTFSIIRPS 447
>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 22.2 bits (45), Expect = 9.7
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 35 LTGDTIFRDKAAEVADTLLPVFETPTG-LPYALIN--PSTNVRR 75
+ G T+F ++AA+ + + P G L Y +++ P N+R+
Sbjct: 193 IEGGTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRK 236
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.141 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,001
Number of Sequences: 5004
Number of extensions: 11432
Number of successful extensions: 39
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 11
length of query: 83
length of database: 2,362,478
effective HSP length: 60
effective length of query: 23
effective length of database: 2,062,238
effective search space: 47431474
effective search space used: 47431474
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)
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