Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002487-TA|BGIBMGA002487-PA|IPR001382|Glycoside
hydrolase, family 47
(83 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1078 - 30655212-30655289,30655614-30655811,30655916-306560... 60 3e-10
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 48 9e-07
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666... 35 0.009
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934... 31 0.087
08_02_1149 + 24706429-24708105 30 0.27
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054... 26 3.3
04_03_0623 - 18109311-18109853,18109900-18110495,18111292-181114... 26 4.3
03_02_0541 - 9343618-9343833,9344008-9344108,9344243-9344325,934... 25 5.7
02_05_0118 - 25991356-25991686,25991797-25992092,25992405-259931... 25 5.7
02_05_0113 - 25941189-25941519,25941630-25941925,25942238-259429... 25 5.7
06_01_0745 + 5570821-5571496,5572205-5572322,5572410-5572571,557... 25 7.6
02_05_0879 - 32444967-32445250,32445643-32445674,32445752-324458... 25 7.6
>04_04_1078 -
30655212-30655289,30655614-30655811,30655916-30656086,
30656172-30656252,30656464-30656565,30656671-30656779,
30656900-30656965,30657566-30657630,30658386-30658475,
30658952-30659123,30659831-30659943,30660046-30660219,
30660300-30660347,30662041-30662205
Length = 543
Score = 59.7 bits (138), Expect = 3e-10
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 19 FETTIRFVGGLLSCYALTGDTIFRDKAAEVADTLLPVFETPTGLPYALIN 68
F+ VGGLLS Y L+GD +F +KA ++ D LLP ++TP+G+PY IN
Sbjct: 162 FQRAREVVGGLLSAYDLSGDKVFLEKAKDITDRLLPAWDTPSGIPYNRIN 211
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 48.0 bits (109), Expect = 9e-07
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 11/67 (16%)
Query: 13 DSELSVFETTIRFVGGLLSCYALTG-------DTIFRDKAAEVADTL----LPVFETPTG 61
D+ +++FE IR +GGL+S + L D ++D+ +A+ L LP FETPTG
Sbjct: 136 DARINLFECNIRLLGGLISGHILAKEHSSHLKDGPYQDQLLHLAENLGSRFLPAFETPTG 195
Query: 62 LPYALIN 68
LPYA IN
Sbjct: 196 LPYAWIN 202
>05_02_0107 -
6667944-6668214,6668376-6668524,6668654-6668851,
6668989-6669250,6669378-6670327,6670907-6671022,
6671121-6671280
Length = 701
Score = 34.7 bits (76), Expect = 0.009
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 12 QDSELSVFETTIRFVGGLLSCYALTG 37
+ ++++FETTIR +GGLLS Y L+G
Sbjct: 270 EKGQVNLFETTIRVLGGLLSAYHLSG 295
>01_06_0881 +
32692345-32692497,32693167-32693286,32693382-32693474,
32694197-32694283,32696052-32696063,32696553-32696625,
32697073-32697182,32697608-32697658,32698154-32698242,
32698518-32698599,32698680-32698793,32699015-32699094,
32699749-32699884,32700210-32700280,32700363-32700457,
32700467-32700597,32701009-32701398
Length = 628
Score = 31.5 bits (68), Expect = 0.087
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 16 LSVFETTIRFVGGLLSCYALTGD 38
+SVFET IR +GGLLS + + D
Sbjct: 126 VSVFETNIRILGGLLSAHLIASD 148
>08_02_1149 + 24706429-24708105
Length = 558
Score = 29.9 bits (64), Expect = 0.27
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 10 ELQDSELSVFETTIRFVGGLLS-CYALTGDTIFRDKAAEVADTLLPVFETP 59
E++D+ L + T R G + + C A ++RDK+ E++ PVF P
Sbjct: 221 EVKDATLPPLKRTKRMDGTVTTHCSAKRKGIVYRDKSMEMSSLKSPVFHVP 271
>05_03_0525 +
15002846-15003048,15004814-15004937,15005458-15005481,
15005995-15006779,15006839-15006873,15007108-15007601,
15007951-15008452,15008725-15008867,15009523-15009576,
15010255-15010362,15010529-15010705,15011169-15011186,
15011561-15011938,15012125-15012310,15012356-15013205,
15013362-15013402,15013491-15013868,15014195-15014236,
15014528-15014678,15015621-15015670
Length = 1580
Score = 26.2 bits (55), Expect = 3.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 10 ELQDSELSVFETTIRFVGGLLSCYALTGDTIFRDKAAEVADTLLPVF-ETPTGLPYALIN 68
EL ++ TT+ FVG + +G I+ D A+E+A P + +TP Y+ +
Sbjct: 11 ELGRMDMMTTLTTLGFVGSDVDVDEDSGKAIWDDLASEIAAAAPPPWIDTPATFLYSWLW 70
Query: 69 P 69
P
Sbjct: 71 P 71
>04_03_0623 -
18109311-18109853,18109900-18110495,18111292-18111493,
18111616-18111814,18112091-18112191
Length = 546
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 11 LQDSELSVFETTIRFVGGLLSCYALTGDTIFRDKAAE 47
+Q E++V TT++ +GG CY G+ + K E
Sbjct: 99 IQSHEINVLMTTMKGIGGFWLCYGF-GEGVGEAKGDE 134
>03_02_0541 -
9343618-9343833,9344008-9344108,9344243-9344325,
9344450-9344634,9344887-9344940,9345050-9345095,
9345511-9345626
Length = 266
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 21 TTIRFVGGLLSCYALTGDTIF--RDKAAEVADTL 52
T +R +G L A+TGD +F R K +AD+L
Sbjct: 47 TLLRSLGKLPPRIAMTGDVLFMKRSKVPVIADSL 80
>02_05_0118 -
25991356-25991686,25991797-25992092,25992405-25993109,
25993197-25993298,25993519-25993846,25994337-25994461,
25994555-25994628,25995110-25995191,25995278-25995391,
25995475-25995575,25995663-25995752,25996316-25996562
Length = 864
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 21 TTIRFVGGLLSCYALTGDTIFRD 43
+ +R +G SC +LTG T+F D
Sbjct: 542 SNLRVIGRSRSCRSLTGSTMFDD 564
>02_05_0113 -
25941189-25941519,25941630-25941925,25942238-25942942,
25943030-25943131,25943352-25943679,25944170-25944294,
25944388-25944453,25945046-25945109,25945739-25945821,
25945917-25945943
Length = 708
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 21 TTIRFVGGLLSCYALTGDTIFRD 43
+ +R +G SC +LTG T+F D
Sbjct: 386 SNLRVIGRSRSCRSLTGSTMFDD 408
>06_01_0745 +
5570821-5571496,5572205-5572322,5572410-5572571,
5572650-5572681,5573406-5573584,5573697-5573897
Length = 455
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 20 ETTIRFVGGLLSCYALTGDTIFRD-KAAEVA 49
+TTI G +C AL G T++ D K +EVA
Sbjct: 28 KTTIEPCAGADTCAALLGYTLYADMKVSEVA 58
>02_05_0879 -
32444967-32445250,32445643-32445674,32445752-32445809,
32445840-32445913,32446004-32446088,32447054-32447735
Length = 404
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 20 ETTIRFVGGLLSCYALTGDTIFRD-KAAEVA 49
+TTI G SC AL G T++ D K +EVA
Sbjct: 30 KTTIEPCTGSDSCSALLGYTLYADMKVSEVA 60
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.141 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,690
Number of Sequences: 37544
Number of extensions: 67649
Number of successful extensions: 189
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 12
length of query: 83
length of database: 14,793,348
effective HSP length: 62
effective length of query: 21
effective length of database: 12,465,620
effective search space: 261778020
effective search space used: 261778020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)
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