GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002487-TA|BGIBMGA002487-PA|IPR001382|Glycoside
hydrolase, family 47
         (83 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   5e-17
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)              39   5e-04
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.18 
SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24)          29   0.54 
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.7  
SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)       27   2.2  
SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_48879| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-07)                 25   8.8  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    25   8.8  

>SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 12  QDSELSVFETTIRFVGGLLSCYALTGDTIFRDKAAEVADTLLPVFETPTGLPYALIN 68
           Q S++SVFE TIRF+GGLLS YAL+G+ +F+ KA E+ D LLP F TPTG+P+A++N
Sbjct: 246 QASDISVFEMTIRFLGGLLSAYALSGEEVFKVKAKELGDKLLPAFNTPTGIPWAMVN 302


>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
          Length = 758

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 15  ELSVFETTIRFVGGLLSCYALTGDTIFRDKA 45
           ++++FE TIR +GGLLS Y L+ D IF +KA
Sbjct: 426 DVNLFEVTIRVLGGLLSAYHLSNDDIFLNKA 456



 Score = 28.7 bits (61), Expect = 0.72
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 40  IFRDKAAEVADTLLPVFETPTGLPYALINPST 71
           + + +  E+ D LLP F + +G+P++ +N  T
Sbjct: 521 MLKTRGVELGDRLLPCFNSQSGIPFSDVNLMT 552


>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 15/70 (21%)

Query: 14  SELSVFETTIRFVGGLLSCYALTGDTI--FRDK------------AAEVADTLLPVF-ET 58
           S + VFE  IR +G LLS + +  D +  F D             A ++A+ L+  F ++
Sbjct: 194 STVQVFEANIRVLGSLLSAHMIIKDPLQPFGDMSPDDYDDELLTLAHDLANRLVDAFNKS 253

Query: 59  PTGLPYALIN 68
           PTG+PY  +N
Sbjct: 254 PTGIPYPRVN 263


>SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24)
          Length = 257

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 54 PVFETPTGLPYALIN 68
          P F+TPTG+PY  +N
Sbjct: 8  PAFDTPTGMPYGTVN 22


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 20   ETTIRFVGGLLSCYALTGDTIFRDKAAEVADTLLPVFETPTGLPYALINPST 71
            ETT+  V  ++    +  DT    K+  +A T++P+ ET  G    L + +T
Sbjct: 1349 ETTVAPVTTVIPETTVAPDTTVAPKSTTLASTVVPITETAAGPETTLASETT 1400


>SB_15393| Best HMM Match : Peptidase_M16_C (HMM E-Value=6.6e-05)
          Length = 683

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 52 LLPVFETPTGLPYALINPSTNVRRVF 77
          LLP+F T  GLP  ++N  T V + F
Sbjct: 36 LLPIFSTFIGLPRVILNLITIVSKAF 61


>SB_14922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 11  LQDSELSVFETTIRFVGGLLSCYALTGDTIFRDKAAEVADTLLPVFETPTGLPYALINPS 70
           L+D   S  ET +RFV G ++  +++   +           L+ V   PT LPY +I P 
Sbjct: 341 LRDDPASDLETVVRFVRGAIAMKSMSHPNVL---------PLVGVVLHPTSLPY-IITPY 390

Query: 71  TNVRRV 76
              RR+
Sbjct: 391 NRDRRL 396


>SB_48879| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-07)
          Length = 368

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 14  SELSVFETTIRFVGGLLSCY------ALTGDTIFRDKAAEVADTLLPVF-----ETPTGL 62
           SE    +T +     L+ CY      ++  + I  ++A  V  TL+P+F      TP+  
Sbjct: 280 SERKALKTVLVITLSLILCYVPVSVLSIAVEAIATEEAERVETTLMPLFVTLFLRTPSVH 339

Query: 63  PYALINPSTNVRR 75
           P+   + S  +R+
Sbjct: 340 PFVYFSCSAKIRK 352


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 17  SVFETTIRFVGGLLSCYALTGDTIFRDKAAEV 48
           S+ +TT RF+      Y LT +  FRD   ++
Sbjct: 754 SIHDTTDRFLVPTSGIYLLTANIAFRDVTGDI 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.141    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,081
Number of Sequences: 59808
Number of extensions: 76047
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 10
length of query: 83
length of database: 16,821,457
effective HSP length: 60
effective length of query: 23
effective length of database: 13,232,977
effective search space: 304358471
effective search space used: 304358471
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)