GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002485-TA|BGIBMGA002485-PA|undefined
         (207 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   1.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.3  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   1.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   1.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.7  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 98  VRHGEEGDDPHIVEDRNRLKAKIDE 122
           +R  E+ +DPH+ E    L + IDE
Sbjct: 47  IRTSEDDNDPHVNEYVESLASIIDE 71


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 98  VRHGEEGDDPHIVEDRNRLKAKIDE 122
           +R  E+ +DPH+ E    L + IDE
Sbjct: 361 IRTSEDDNDPHVNEYVESLASIIDE 385


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 98  VRHGEEGDDPHIVEDRNRLKAKIDE 122
           +R  E+ +DPH+ E    L + IDE
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDE 618



 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 183  VAIGPNADPDQKQKLETVKED 203
            V + P  DP+  QK+E  K +
Sbjct: 1037 VTVVPKPDPNAVQKIEEKKPE 1057


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 98  VRHGEEGDDPHIVEDRNRLKAKIDE 122
           +R  E+ +DPH+ E    L + IDE
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDE 618



 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 183  VAIGPNADPDQKQKLETVKED 203
            V + P  DP+  QK+E  K +
Sbjct: 1037 VTVVPKPDPNAVQKIEEKKPE 1057


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory
          receptor candidate 27 protein.
          Length = 346

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/38 (23%), Positives = 21/38 (55%)

Query: 11 FVNGVPVPSISRRSFRIREKYLIVSVLLTFGIVWLGAL 48
          F+  + V  +   ++R+ + +++ S  +TF   W+ AL
Sbjct: 16 FLKALTVWHVENPTYRLYKIFVVFSFAVTFFSAWICAL 53


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 136 VAPSVSSSRGPSKPPVDAIEEPAVRN 161
           +A +V+S+ GPS+ P  +  E  +RN
Sbjct: 271 LASAVASANGPSQDPSISSTETLLRN 296


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 137 APSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAI 185
           +P+   S+   K P      P+V + + KD +      +GS+  V  AI
Sbjct: 684 SPTRDKSKQNEKSPSPQQRSPSVTDLSTKDGTTVPESNNGSSPSVLNAI 732


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,825
Number of Sequences: 317
Number of extensions: 2007
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 207
length of database: 114,650
effective HSP length: 54
effective length of query: 153
effective length of database: 97,532
effective search space: 14922396
effective search space used: 14922396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)