GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002485-TA|BGIBMGA002485-PA|undefined
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   3.5  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   3.5  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   6.1  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   6.1  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.0  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 103 EGDDPHIVEDRNRLKAKIDEDMGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNF 162
           +G+ P  +  R    + +++     V + P+    PS  +S   +   V   E+ AV N+
Sbjct: 546 DGESPSSISSRLP-SSNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNY 604

Query: 163 AAKDASPAGPKPDGS---NRYVA 182
           A   + P      GS   N +VA
Sbjct: 605 ATPLSKPQPKDTKGSKLGNTFVA 627


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 97   IVRHGEEGDDPHIVEDRNRLKAKIDEDMGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEE 156
            ++R  E  D P + + +   K+ +  D   K L+R   D    +S+   P  PP  A+ +
Sbjct: 1836 LLRRDESKDQPTVYKAKLGEKSHLHYD---KELKRWVNDDGSDLSNQAAPPPPPPMALPK 1892

Query: 157  PAVRNFAAKDASPAGPKPDGS 177
                + A   A P    P G+
Sbjct: 1893 AGPPSAAPTSALPPAGPPAGA 1913


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/35 (25%), Positives = 21/35 (60%)

Query: 136 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPA 170
           +A  ++S   P +PP ++ ++P++ N    + SP+
Sbjct: 436 IAEGIASLLNPEEPPSNSDKQPSMSNGPKSEVSPS 470


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 156 EPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNADPDQKQKLETVKEDILST 207
           EPA    +A+D +P+ PK  GS      +         K        DI+ST
Sbjct: 354 EPASSTTSARDQTPSTPKDVGSPSTAETSAEEKQMETYKTPTHAALSDIIST 405


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 131 RPQFDVAPSVSSSRGPSKPPVDAIEE 156
           RP  +VAPS + SR PS   V++  E
Sbjct: 308 RPNNEVAPSSAPSRAPSTTSVESNTE 333


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 138 PSVSSSRGPSKPPVDAIEE--PAVRNFAAKDASPAGPKPDGSNRYVAVAIGP 187
           PSV  S  PS PP        PA    +A  A+PA       NR    A  P
Sbjct: 51  PSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQP 102


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 958,480
Number of Sequences: 5004
Number of extensions: 39307
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 8
length of query: 207
length of database: 2,362,478
effective HSP length: 70
effective length of query: 137
effective length of database: 2,012,198
effective search space: 275671126
effective search space used: 275671126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)