GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002485-TA|BGIBMGA002485-PA|undefined
         (207 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical ...    31   0.79 
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z72514-7|CAA96680.2|  280|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL117195-31|CAB55014.1|  458|Caenorhabditis elegans Hypothetical...    28   4.2  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    28   5.5  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AL033536-5|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    27   7.3  
Z77133-1|CAB00865.1|  969|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical p...    27   9.7  
Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical p...    27   9.7  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    27   9.7  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    27   9.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z77657-7|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 102 EEGDDPHIVEDRNRLKAKIDE----DMG-MKVLERPQFDVAPSVSSSRGPSKPPV-DAIE 155
           EE D+    E RNRLKA+++     D+  MK +  P  D +P ++    P +    + +E
Sbjct: 420 EEEDEDEETERRNRLKAELEPLETIDLSQMKFMTTPLKDKSPILTPVHRPEEIEFREELE 479

Query: 156 EPAVRNFAAKDASPAGPK 173
            P    F   + +P  PK
Sbjct: 480 LPRFEQFEPMNVNPISPK 497


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 145 GPSKP--PVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNADP 191
           GP  P  P  +  +P     A KD  P  P PDG +     A GPN +P
Sbjct: 156 GPEGPAGPAGSDGQPGAPGDAGKDGPPGPPGPDGDSGPNGEA-GPNGEP 203


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 130 ERPQFDVAPSVSSS-RGPSKP-PVDAIEEPAVRNFAAKDASPAGPKPDG 176
           E PQ  V PS      GP  P PVD  E+P      ++D  P+GP   G
Sbjct: 131 EDPQPSVEPSEDHQPSGPPSPGPVDPSEDPQPSVEPSEDPQPSGPPSPG 179


>AF098997-2|AAC68722.2|  796|Caenorhabditis elegans Hypothetical
           protein T10D4.6 protein.
          Length = 796

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 93  PVVGIVRHGEEGDDPHIVED----RNRLKAKIDEDMGM-KVLERPQFDVAPSVSSSRGPS 147
           P V +    E G+DPH   D     + L++ +D D    K     + + + S+  +   S
Sbjct: 562 PTVAVCPATETGEDPHASSDPSPSTSDLRSSMDADPATEKRATEERSESSRSLPPTVDVS 621

Query: 148 KPPVDAIE--EPAVRNFAAKDASPAGPKPDGSNRYV--AVAIGPNADPDQKQKLETVKED 203
            PP  A     P     A+ DASP  P    +   +  +  +G N     + KLE V ++
Sbjct: 622 SPPPVASSSCSPYPALLASADASPQVPAWASARSSISRSTPVGRNIQAHLQPKLEPVDDE 681

Query: 204 I 204
           I
Sbjct: 682 I 682


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 146 PSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNADPDQKQKL 197
           P  PP DA   PA       +A+PA P  D      A + G  + P +K+++
Sbjct: 42  PPPPPADAAPAPAPA--PEPEAAPAAPAADAGGYAAAASAGGGSYPAKKRRV 91


>Z72514-7|CAA96680.2|  280|Caenorhabditis elegans Hypothetical
           protein T10B10.8 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 107 PHIVED--RNRLKAKIDEDMGMKVLERPQFDVAPSV-SSSRGPSKP 149
           PH  E+   NRL A+ + D+GM  L   +  V P++   + GP+KP
Sbjct: 93  PHTCENYSMNRLSAQFNYDIGMYYLNNGRLLVDPAIFHYTLGPTKP 138


>AL117195-31|CAB55014.1|  458|Caenorhabditis elegans Hypothetical
           protein Y57A10A.11 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 138 PSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSN-RYVAVAIGPNADP 191
           P V   +GP + PV A  +   R    KD  P  P   G N + V    GP   P
Sbjct: 327 PGVFGEKGP-QGPVGAPGQKGRRGEKGKDGEPGAPGAPGENVKEVPAIPGPQGTP 380


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 97  IVRHGEEGDDPHIVEDRNRLKAKIDEDMGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEE 156
           I+R  E   D     D   LKAK++E    K+ E      + +      P+ PP+D    
Sbjct: 413 ILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSPASPPMDCPAS 472

Query: 157 P 157
           P
Sbjct: 473 P 473


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 124 MGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKP 174
           +G+ +++    +  P  S +  P+ PP   +  PA+R   AK  S   P+P
Sbjct: 72  IGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLEPPQP 122


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 121 DEDMGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKD---ASPAGPKPDGS 177
           D+D   K +  P+ +    V + + P+KP  +A  +P V   ++KD   A  A  KP   
Sbjct: 679 DDDAPAKPVSLPEPEKKTPVLAKKAPTKPDSEAAADP-VSGPSSKDPKLAKKAPVKPRDP 737

Query: 178 NRYVAVAIGP 187
           +   AV I P
Sbjct: 738 SPMKAVPIKP 747


>AL033536-5|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 138  PSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDG 176
            P+  S  GPS P   +   P+    +    SP GP P+G
Sbjct: 988  PNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNG 1026


>Z77133-1|CAB00865.1|  969|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 969

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 106 DPHIVEDRNRLKAKIDEDMGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAK 165
           D +I +D+ +LK K  ++  MK+L   QF    + +S     +P   A+     +  A +
Sbjct: 376 DKNIGQDKVQLKQKSKDEAVMKILR--QFS-GTNEASDPSDERPVHQALG--INKKMAHQ 430

Query: 166 DASPAGPKPDGSNRYVAVAIGPNADPDQKQKLETVKE 202
               +  +   S   + V+IG   D  Q  KL+T KE
Sbjct: 431 TTQNSQLRITTSGNELKVSIGKKFDEAQINKLQTEKE 467


>Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 136 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKP 174
           +A S        KPPV AI  P +   + + A+P    P
Sbjct: 420 IARSPIGQNTTMKPPVTAIPRPPIEKHSVRKAAPVAHSP 458


>Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 136 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKP 174
           +A S        KPPV AI  P +   + + A+P    P
Sbjct: 420 IARSPIGQNTTMKPPVTAIPRPPIEKHSVRKAAPVAHSP 458


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 136 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDG 176
           V+PS SSSR P +P   A    A      K  +  G K DG
Sbjct: 497 VSPSSSSSRRPRQPKPRANNTAAGAGGGGKRGTSGGRKSDG 537


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 136 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDG 176
           V+PS SSSR P +P   A    A      K  +  G K DG
Sbjct: 857 VSPSSSSSRRPRQPKPRANNTAAGAGGGGKRGTSGGRKSDG 897


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 138 PSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNADP 191
           P+V+    PS+P      + A  + ++ +A P GP P G +  V +A+ P   P
Sbjct: 584 PAVNPEPSPSQPSSSGPIQTAPPSPSSPNAIPEGP-PPGPDVPVMIALPPPKSP 636


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.138    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,345,184
Number of Sequences: 27539
Number of extensions: 233381
Number of successful extensions: 666
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 26
length of query: 207
length of database: 12,573,161
effective HSP length: 78
effective length of query: 129
effective length of database: 10,425,119
effective search space: 1344840351
effective search space used: 1344840351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)