GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002484-TA|BGIBMGA002484-PA|undefined
         (88 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q62A96 Cluster: Penicillin-binding protein, 1A family; ...    33   1.5  
UniRef50_A6NZC5 Cluster: Putative uncharacterized protein; n=1; ...    31   6.0  

>UniRef50_Q62A96 Cluster: Penicillin-binding protein, 1A family;
           n=28; Burkholderia|Rep: Penicillin-binding protein, 1A
           family - Burkholderia mallei (Pseudomonas mallei)
          Length = 713

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 12  PVASNMVVGVLQATLRRDLVAGKSTALLYAEGLFYRQ 48
           P A N VV   +AT+RR+ V G+  AL Y +   YRQ
Sbjct: 230 PSAFNPVVNPARATMRRNYVLGRMRALGYLDEAAYRQ 266


>UniRef50_A6NZC5 Cluster: Putative uncharacterized protein; n=1;
          Bacteroides capillosus ATCC 29799|Rep: Putative
          uncharacterized protein - Bacteroides capillosus ATCC
          29799
          Length = 249

 Score = 30.7 bits (66), Expect = 6.0
 Identities = 12/41 (29%), Positives = 25/41 (60%)

Query: 5  VRLLTLRPVASNMVVGVLQATLRRDLVAGKSTALLYAEGLF 45
          ++L T RP+ + +VVG++   L+  L+ G +  L++   +F
Sbjct: 23 LQLQTTRPIITGVVVGLIMGDLQTGLIVGATVELMFLAVVF 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.323    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,365,958
Number of Sequences: 1657284
Number of extensions: 1506034
Number of successful extensions: 3063
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3061
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 575,637,011
effective HSP length: 66
effective length of query: 22
effective length of database: 466,256,267
effective search space: 10257637874
effective search space used: 10257637874
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 65 (30.3 bits)