GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002484-TA|BGIBMGA002484-PA|undefined
         (88 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               25   8.6  
SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.6  
SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)                25   8.6  

>SB_41121| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 550

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 14  ASNMVVGVLQATLRRDLVAGKSTALLYAEG 43
           A+N+V   L   ++RD+V  K+T  L+A G
Sbjct: 236 AANIVSNQLYKKIKRDVVLRKTTKKLFAFG 265


>SB_4685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 14  ASNMVVGVLQATLRRDLVAGKSTALLYAEG 43
           A+N+V   L   ++RD+V  K+T  L+A G
Sbjct: 190 AANIVSNQLYKKIKRDVVLRKTTKKLFAFG 219


>SB_3304| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 285

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 14  ASNMVVGVLQATLRRDLVAGKSTALLYAEG 43
           A+N+V   L   ++RD+V  K+T  L+A G
Sbjct: 120 AANIVSNQLYKKIKRDVVLRKTTKKLFAFG 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,273
Number of Sequences: 59808
Number of extensions: 38621
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 3
length of query: 88
length of database: 16,821,457
effective HSP length: 65
effective length of query: 23
effective length of database: 12,933,937
effective search space: 297480551
effective search space used: 297480551
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)