Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002482-TA|BGIBMGA002482-PA|IPR010994|RuvA domain 2-like,
IPR004579|DNA repair protein rad10
(278 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom... 214 1e-56
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch... 31 0.24
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 3.0
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 3.9
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 6.9
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 26 6.9
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 26 6.9
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 26 6.9
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 9.1
>SPBC4F6.15c |swi10|rad23|DNA repair
endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 252
Score = 214 bits (523), Expect = 1e-56
Identities = 97/226 (42%), Positives = 153/226 (67%), Gaps = 1/226 (0%)
Query: 27 VDEISAQAGTSDEATIKPRSSKT-HCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
++E+ +AG + + T + S T H +LVN Q+GNPLL H+ +VPWEY DIVPD+ +G
Sbjct: 17 LEEVEKKAGFAQQPTPQKVSRVTAHSILVNPRQKGNPLLPHVRNVPWEYTDIVPDFVMGT 76
Query: 86 TICLLFLSLRYHNLNPDYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDI 145
IC LFLSL+YH+L+P+YI++R+ +LGK Y+LR+LL+ VD+++ AS++ L + ++
Sbjct: 77 GICSLFLSLKYHHLHPEYIYSRISKLGKSYNLRILLILVDVENHQASIQELVKTSIVNQY 136
Query: 146 TLMLAWNPEEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLI 205
TL+LAW+ EEAA+ +E YK YEN P IMEK D ++ + L+SI+ +NK+D+++L+
Sbjct: 137 TLILAWSSEEAARYLETYKAYENMSPALIMEKPSTDYLSQVQSFLTSIRGINKSDSLSLL 196
Query: 206 KTFGTLENIIKVSESRLAECPGFGITKAKKLYKALHEPFLKKGQTK 251
FG+LE + S L + G+G TK + +A+ +PF+ K
Sbjct: 197 SKFGSLERALVASRDELEQLEGWGPTKVNRFLEAVQQPFMSHSTIK 242
>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 30.7 bits (66), Expect = 0.24
Identities = 32/156 (20%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 129 PHASLKNLTRICLLTDITLMLAWNPEEAAKVVENYKIYENKPPDRIMEKIENDPHQ--KI 186
P AS+K L +L+D ++A++ +++++ ++ ++ D+++E ++D H+ K
Sbjct: 129 PAASVKALVGAGVLSDELSVIAYDMSFEDELIQDKQLIDHSVFDQLLEMDDDDEHEFSKS 188
Query: 187 I------NALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLYKAL 240
I A ++I + K +K +L + +K S + L G+TK +K+ + +
Sbjct: 189 IVWNYFEQAETTIADLQKALEAKDLKKLSSLGHFLKGSSAVL------GLTKMRKVCERI 242
Query: 241 HEPFLKKGQTKDKKDEFPDEDLTLEELEKIVNENQD 276
+++D + P E++ L+ + K ++ D
Sbjct: 243 QN--YGSLRSRDGVMKLPSEEIALDLISKSLSVVND 276
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 102 DYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDITLMLAW-NPEE 155
+Y +E +K + ++++LKDP+ +N+ ++I LML NPEE
Sbjct: 992 EYADQLEREFHQKKRNTLEKIRLELKDPYGEQRNVFHKLTPSEIFLMLTGENPEE 1046
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 41 TIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGKTICLLFLSLRYHNLN 100
T K +SS + V +++ N LK++ S E DD++PD + L +L H
Sbjct: 197 TKKVKSSNRNFVTIHEL---NEHLKNVNSKHSEIDDLLPDKR--SIVSLPPSTLNLHK-Q 250
Query: 101 PDYIH 105
PDY H
Sbjct: 251 PDYAH 255
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 6.9
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 164 KIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSE---- 219
K+ ++ D +EK ++D +K++N IK A+ I NI K++
Sbjct: 190 KVLDSLHLDTPLEKWDDDTIEKVVNRFVDIK-FPTVIALNKIDHPDADANISKIARKEDP 248
Query: 220 SRLAECPGFGITKAKKLYKALHEPFLKKGQTKDKKDEFPDEDL--TLEELEKIVNENQDI 277
+RL ++L K + + + D D+FPD L E L+ + + QD+
Sbjct: 249 NRLVLASAISEVFLRRLAKQGFVKYEEGSEFVDTLDDFPDSGLKPLSENLKTRIADLQDM 308
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 145 ITLMLAWNPEEAAKVVENYKIYENKPPDRIMEKIEND 181
+ + L + E K +E K Y + DR++E+++ND
Sbjct: 318 VEMYLNYQENEPEKALELEKRYGKRIIDRLVEQVKND 354
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 232 KAKKLYKALHEP---FLKKGQTKDKKDEFPDEDLTLEELEKIVNEN 274
K K + LH P LKKGQTK+++ P + + + + +V +N
Sbjct: 54 KLKSKAEELHMPVTNLLKKGQTKEREHVIPKKSFSAK--KSLVGQN 97
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 85 KTICLLFLSLRYHNLNPDYIHNRL 108
K + L FL ++Y ++ PD I NR+
Sbjct: 7 KVLLLTFLRMQYSHILPDSIENRV 30
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 89 LLFLSLRYHNLNPDYIHNRL 108
++F LRY+N DY++N+L
Sbjct: 58 VVFEELRYYNYAVDYVNNKL 77
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,130
Number of Sequences: 5004
Number of extensions: 57304
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 9
length of query: 278
length of database: 2,362,478
effective HSP length: 72
effective length of query: 206
effective length of database: 2,002,190
effective search space: 412451140
effective search space used: 412451140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)
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