Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002482-TA|BGIBMGA002482-PA|IPR010994|RuvA domain 2-like,
IPR004579|DNA repair protein rad10
(278 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793... 30 1.8
08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818 30 1.8
11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451 30 2.4
04_04_0484 - 25570798-25570964,25572641-25572679,25572718-255728... 30 2.4
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 30 2.4
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 29 3.1
12_02_0700 + 22259921-22260207,22264678-22264750,22265062-222658... 29 5.5
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611... 29 5.5
05_04_0036 + 17386160-17386318,17386588-17386651,17387089-173871... 29 5.5
11_06_0550 + 24879074-24881290 28 7.2
12_02_0455 - 19203028-19203186,19203485-19203859,19203981-192040... 28 9.5
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 28 9.5
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545... 28 9.5
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897... 28 9.5
>11_06_0542 +
24777453-24777632,24777654-24778478,24778576-24779319,
24779422-24780354,24780456-24780938,24780969-24781082,
24781240-24781636,24781732-24782024,24782392-24782802
Length = 1459
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 98 NLNPDYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNL 136
N+ +I LK++GK + LR L V +D KD + LKNL
Sbjct: 944 NVKASWISRELKDIGKLWQLRKLGVVIDDKD--SILKNL 980
>08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818
Length = 557
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 183 HQKIINAL----SSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLYK 238
H +I+N L +++ + + + T++ + L ++ ++ S L+ PG G+ KK
Sbjct: 166 HTEIVNLLLESDANLARIARNNGKTVLHSAARLGHV-EIVRSLLSRDPGIGLRTDKKGQT 224
Query: 239 ALHEPFLKKGQTKDKKDEFPDEDLTLEELE 268
ALH KGQ + E D+++ LE
Sbjct: 225 ALH--MASKGQNAEIVIELLKPDISVIHLE 252
>11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451
Length = 735
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 85 KTICLLFLSLRYHNLNPDYIHNRLKELGKKYDLRVLLVQ-VDLKDPHASLKNLTRICLL 142
K ICL +L LRY NL+ + +E+ L+VL + ++++D ++ L +I L
Sbjct: 420 KDICLYWLHLRYLNLSRTSVTEIPREIENLQSLQVLCINGIEIEDLPSTFVRLGQILYL 478
>04_04_0484 -
25570798-25570964,25572641-25572679,25572718-25572869,
25572975-25573090,25573196-25573363,25574202-25574300,
25574450-25574650,25575369-25575689
Length = 420
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 93 SLRYHNLNPDYIH-NRLKELGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDITLMLAW 151
SL+ PD +H + L Y LR+ + + K + S+ + + + ++++LAW
Sbjct: 12 SLKGTEETPDIVHLTHMTSLKSTYHLRIGITSISSKPCNDSVWYMWMLWPVAWLSMVLAW 71
Query: 152 NPEEAAKVVENYKI 165
+A VVE K+
Sbjct: 72 IYGSSAFVVERLKL 85
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/31 (35%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 246 KKGQTKDKKDEFP-DEDLTLEELEKIVNENQ 275
K+G++ +++++ P D+++TLEE EK++ E +
Sbjct: 225 KEGESNEEEEKEPEDKEMTLEEYEKVLEEKR 255
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 35 GTSDEATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGKTICLLFL 92
G +A IKP+ + +NK++ + H SV +I+ DY+ G ++C F+
Sbjct: 260 GDIPDAEIKPQDNVLFVRELNKDEDLYTIFSHFGSVTSA--EIIRDYKTGDSLCFAFI 315
>12_02_0700 +
22259921-22260207,22264678-22264750,22265062-22265802,
22265849-22266424,22266505-22266957
Length = 709
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 153 PEEAAKVVENYK-IYENKPPDRIMEKIEN 180
P+E + VE Y+ +YE +PP +EK +N
Sbjct: 311 PDEEVEFVEMYRLVYEREPPHLSLEKYKN 339
>10_08_0745 -
20260136-20260236,20260890-20260937,20261025-20261165,
20261358-20261603,20261744-20262583,20263253-20263286
Length = 469
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 187 INALSSIKPVNKTDAMTLIKTFGTLENIIKVSE 219
I L +++P N TDA +K T E I+ VS+
Sbjct: 172 IPELCTLRPSNLTDASCPVKDISTFEKIVNVSK 204
>05_04_0036 +
17386160-17386318,17386588-17386651,17387089-17387147,
17387268-17387343,17387521-17387592,17387786-17387873,
17387992-17388250,17388446-17388561,17388876-17389096,
17389196-17389224,17389285-17389420,17389567-17389651,
17389735-17389963
Length = 530
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 67 ITSVPWEYDDIVPDYEVGKTICLLFLS--LRYHNLNPDYIHNRLKELGKKYDLRVLLVQV 124
I+S+ W + P E CLL L L +L+P + L+ L +KY + +Q
Sbjct: 366 ISSLFWASKNSTPTRETVTWFCLLLLRQFLPGTSLDPRGLELALEYLQEKYGNLLFYIQE 425
Query: 125 DLKDPHASLKNLTRICLLT 143
+ +A+L ++ RI LT
Sbjct: 426 NGSGSNATLDDVGRIDCLT 444
>11_06_0550 + 24879074-24881290
Length = 738
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 98 NLNPDYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNL 136
N+ + LK++GK + LR L V +D KD + LKNL
Sbjct: 268 NVKASWTSRELKDIGKLWQLRKLGVVIDDKD--SILKNL 304
>12_02_0455 -
19203028-19203186,19203485-19203859,19203981-19204090,
19204200-19204243,19204435-19204635,19204937-19205079,
19205194-19205487,19205956-19206003
Length = 457
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 152 NPEEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTL 211
N E+ YK+ EN + E IE D + + N S+ K V K +A GT
Sbjct: 215 NEEKLNGSTNIYKLGENGSVEPNKEVIEKDAPKDLENGASATKYVAKAEA-------GTA 267
Query: 212 ENIIKVSESR 221
E +I++ E R
Sbjct: 268 EYLIELEERR 277
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/114 (22%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 40 ATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDY--EVGKTICLLFLSLRYH 97
A + ++ T +L N + G+ + + +Y D+ ++ + +C L ++L Y
Sbjct: 529 AISEDQTKLTVLILQNNDLHGSSVSSLCFFISLQYLDLSRNWLKTIPSEVCKL-VNLYYL 587
Query: 98 NLNPDYIHNRLKELGKKYDLRVLLVQVD-LKD-PHASLKNLTRICLLTDITLML 149
NL+ + I + +ELG + L+ LL++ + +++ P L L+R+ + +L L
Sbjct: 588 NLSDNKIKDLPQELGLLFKLQYLLLRSNPIREIPEVILSKLSRLQVADFCSLQL 641
>09_04_0175 -
15353903-15354005,15354189-15354280,15354408-15354553,
15354661-15354814,15354885-15354985,15355055-15355145,
15355146-15355378,15355501-15355736,15355839-15356066,
15356150-15356370,15356869-15356990,15357125-15357451,
15357616-15357754,15357822-15357901,15358478-15358678,
15359431-15359757,15360144-15360897
Length = 1184
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 59 RGNPLLKHITSVPWEYDDIVPDYEVGKTICLLFLSLRYHNLNPDYIHNRLKELGKKYDLR 118
RG+PLL + P + ++ G + +F L DY N + ++ +D R
Sbjct: 241 RGSPLLLTVNPGPVDIAKSTCSWKYGTNVLQIFSKLEIFIHQKDYFGNAVPDI-HPFDAR 299
Query: 119 VLLVQVDLKDPHASL 133
++ +L P A L
Sbjct: 300 IVKRATNLSVPVADL 314
>01_06_0541 -
30088910-30089107,30089421-30089477,30089563-30089721,
30090639-30090777,30090863-30091247,30091612-30091816
Length = 380
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 246 KKGQTKDKKDEFPDEDLTLEELEKIVNENQ 275
K+G +++++ D+++TLEE EK+ E +
Sbjct: 229 KEGAANEEEEKEEDKEMTLEEFEKLREEKR 258
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.135 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,445,657
Number of Sequences: 37544
Number of extensions: 295230
Number of successful extensions: 556
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 18
length of query: 278
length of database: 14,793,348
effective HSP length: 81
effective length of query: 197
effective length of database: 11,752,284
effective search space: 2315199948
effective search space used: 2315199948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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