GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002482-TA|BGIBMGA002482-PA|IPR010994|RuvA domain 2-like,
IPR004579|DNA repair protein rad10
         (278 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060971-1|AAL28519.1|  244|Drosophila melanogaster GM10122p pro...   282   4e-76
AF146797-1|AAD38010.1|  259|Drosophila melanogaster nucleotide e...   282   4e-76
AE013599-1966|AAF58196.1|  259|Drosophila melanogaster CG10215-P...   282   4e-76
AY119587-1|AAM50241.1| 1235|Drosophila melanogaster LD15137p pro...    33   0.57 
AE014298-1784|AAN09312.1| 1052|Drosophila melanogaster CG1848-PD...    33   0.57 
AE014298-1783|AAN09311.1| 1257|Drosophila melanogaster CG1848-PC...    33   0.57 
AE014298-1782|AAF48176.2| 1235|Drosophila melanogaster CG1848-PA...    33   0.57 
AB042818-1|BAB17234.1| 1257|Drosophila melanogaster LIM-kinase1 ...    33   0.57 
AB042816-1|BAB17233.1| 1235|Drosophila melanogaster LIM-kinase1 ...    33   0.57 
AY058777-1|AAL14006.1|  721|Drosophila melanogaster SD06355p pro...    30   4.0  
AE014134-876|AAN10529.1|  566|Drosophila melanogaster CG14039-PC...    30   4.0  
AE014134-875|AAN10528.1|  598|Drosophila melanogaster CG14039-PD...    30   4.0  
AE014134-874|AAX52656.1|  535|Drosophila melanogaster CG14039-PG...    30   4.0  
AE014134-873|AAN10527.1|  566|Drosophila melanogaster CG14039-PB...    30   4.0  
AE014134-872|AAX52655.1|  690|Drosophila melanogaster CG14039-PE...    30   4.0  
AE014134-871|AAX52654.1|  721|Drosophila melanogaster CG14039-PF...    30   4.0  
AE014134-870|AAF52216.2|  721|Drosophila melanogaster CG14039-PA...    30   4.0  
AY069492-1|AAL39637.1|  449|Drosophila melanogaster LD22082p pro...    29   7.1  
AE014134-1435|AAF52625.2|  449|Drosophila melanogaster CG8282-PA...    29   7.1  
BT022654-1|AAY55070.1|  140|Drosophila melanogaster IP07058p pro...    29   9.3  
BT021418-1|AAX33566.1|  901|Drosophila melanogaster LD04461p pro...    29   9.3  
AE014298-1652|AAF48069.1|  901|Drosophila melanogaster CG1703-PA...    29   9.3  
AE014134-2403|AAF53335.1|  169|Drosophila melanogaster CG16888-P...    29   9.3  

>AY060971-1|AAL28519.1|  244|Drosophila melanogaster GM10122p
           protein.
          Length = 244

 Score =  282 bits (691), Expect = 4e-76
 Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 2/215 (0%)

Query: 34  AGTSDEATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEY-DDIVPDYEVGKTICLLFL 92
           +G+   A  KP +S  HCVLV+  QRGNP+LK I +VP E+ DDIVPDY VG+T C+L+L
Sbjct: 31  SGSGRPAPGKP-ASNPHCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYL 89

Query: 93  SLRYHNLNPDYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDITLMLAWN 152
           SL+YHNLNPDYI  RLK LGK Y+LRVLLVQVD  +P+ +LK+LTRI LL D+T+MLAWN
Sbjct: 90  SLKYHNLNPDYICQRLKALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWN 149

Query: 153 PEEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLE 212
            EEA K++E YK +E +PPD IME++E++PHQK++ AL++IKPVNKTDA  L+ TFG L 
Sbjct: 150 AEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLG 209

Query: 213 NIIKVSESRLAECPGFGITKAKKLYKALHEPFLKK 247
           NII  SE RL++  G G  KAKKLYK L EPFL K
Sbjct: 210 NIINASEERLSQVMGLGPRKAKKLYKTLQEPFLSK 244


>AF146797-1|AAD38010.1|  259|Drosophila melanogaster nucleotide
           excision repair proteinERCC1 protein.
          Length = 259

 Score =  282 bits (691), Expect = 4e-76
 Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 2/215 (0%)

Query: 34  AGTSDEATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEY-DDIVPDYEVGKTICLLFL 92
           +G+   A  KP +S  HCVLV+  QRGNP+LK I +VP E+ DDIVPDY VG+T C+L+L
Sbjct: 46  SGSGRPAPGKP-ASNPHCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYL 104

Query: 93  SLRYHNLNPDYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDITLMLAWN 152
           SL+YHNLNPDYI  RLK LGK Y+LRVLLVQVD  +P+ +LK+LTRI LL D+T+MLAWN
Sbjct: 105 SLKYHNLNPDYICQRLKALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWN 164

Query: 153 PEEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLE 212
            EEA K++E YK +E +PPD IME++E++PHQK++ AL++IKPVNKTDA  L+ TFG L 
Sbjct: 165 AEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLG 224

Query: 213 NIIKVSESRLAECPGFGITKAKKLYKALHEPFLKK 247
           NII  SE RL++  G G  KAKKLYK L EPFL K
Sbjct: 225 NIINASEERLSQVMGLGPRKAKKLYKTLQEPFLSK 259


>AE013599-1966|AAF58196.1|  259|Drosophila melanogaster CG10215-PA
           protein.
          Length = 259

 Score =  282 bits (691), Expect = 4e-76
 Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 2/215 (0%)

Query: 34  AGTSDEATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEY-DDIVPDYEVGKTICLLFL 92
           +G+   A  KP +S  HCVLV+  QRGNP+LK I +VP E+ DDIVPDY VG+T C+L+L
Sbjct: 46  SGSGRPAPGKP-ASNPHCVLVHSKQRGNPILKSILNVPLEFRDDIVPDYVVGRTSCVLYL 104

Query: 93  SLRYHNLNPDYIHNRLKELGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDITLMLAWN 152
           SL+YHNLNPDYI  RLK LGK Y+LRVLLVQVD  +P+ +LK+LTRI LL D+T+MLAWN
Sbjct: 105 SLKYHNLNPDYICQRLKALGKMYELRVLLVQVDTPEPNNALKSLTRISLLADLTMMLAWN 164

Query: 153 PEEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLE 212
            EEA K++E YK +E +PPD IME++E++PHQK++ AL++IKPVNKTDA  L+ TFG L 
Sbjct: 165 AEEAGKIIETYKQFEKRPPDLIMERVESNPHQKLLAALTNIKPVNKTDAAALLHTFGNLG 224

Query: 213 NIIKVSESRLAECPGFGITKAKKLYKALHEPFLKK 247
           NII  SE RL++  G G  KAKKLYK L EPFL K
Sbjct: 225 NIINASEERLSQVMGLGPRKAKKLYKTLQEPFLSK 259


>AY119587-1|AAM50241.1| 1235|Drosophila melanogaster LD15137p
           protein.
          Length = 1235

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 178 IENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLY 237
           +E+DP Q +  + S         A TLI    T  + ++V   RL + PG   TKA+KL 
Sbjct: 248 VEHDPVQ-VCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLR 306

Query: 238 KA 239
           +A
Sbjct: 307 QA 308


>AE014298-1784|AAN09312.1| 1052|Drosophila melanogaster CG1848-PD,
           isoform D protein.
          Length = 1052

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 178 IENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLY 237
           +E+DP Q +  + S         A TLI    T  + ++V   RL + PG   TKA+KL 
Sbjct: 65  VEHDPVQ-VCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLR 123

Query: 238 KA 239
           +A
Sbjct: 124 QA 125


>AE014298-1783|AAN09311.1| 1257|Drosophila melanogaster CG1848-PC,
           isoform C protein.
          Length = 1257

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 178 IENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLY 237
           +E+DP Q +  + S         A TLI    T  + ++V   RL + PG   TKA+KL 
Sbjct: 270 VEHDPVQ-VCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLR 328

Query: 238 KA 239
           +A
Sbjct: 329 QA 330


>AE014298-1782|AAF48176.2| 1235|Drosophila melanogaster CG1848-PA,
           isoform A protein.
          Length = 1235

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 178 IENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLY 237
           +E+DP Q +  + S         A TLI    T  + ++V   RL + PG   TKA+KL 
Sbjct: 248 VEHDPVQ-VCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLR 306

Query: 238 KA 239
           +A
Sbjct: 307 QA 308


>AB042818-1|BAB17234.1| 1257|Drosophila melanogaster LIM-kinase1
           protein.
          Length = 1257

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 178 IENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLY 237
           +E+DP Q +  + S         A TLI    T  + ++V   RL + PG   TKA+KL 
Sbjct: 270 VEHDPVQ-VCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLR 328

Query: 238 KA 239
           +A
Sbjct: 329 QA 330


>AB042816-1|BAB17233.1| 1235|Drosophila melanogaster LIM-kinase1
           protein.
          Length = 1235

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 178 IENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAKKLY 237
           +E+DP Q +  + S         A TLI    T  + ++V   RL + PG   TKA+KL 
Sbjct: 248 VEHDPVQ-VCRSCSQADIQRAMSASTLILPLSTSASSVEVGRERLYKTPGEQGTKARKLR 306

Query: 238 KA 239
           +A
Sbjct: 307 QA 308


>AY058777-1|AAL14006.1|  721|Drosophila melanogaster SD06355p
           protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 497 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 543


>AE014134-876|AAN10529.1|  566|Drosophila melanogaster CG14039-PC,
           isoform C protein.
          Length = 566

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 342 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 388


>AE014134-875|AAN10528.1|  598|Drosophila melanogaster CG14039-PD,
           isoform D protein.
          Length = 598

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 374 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 420


>AE014134-874|AAX52656.1|  535|Drosophila melanogaster CG14039-PG,
           isoform G protein.
          Length = 535

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 342 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 388


>AE014134-873|AAN10527.1|  566|Drosophila melanogaster CG14039-PB,
           isoform B protein.
          Length = 566

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 342 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 388


>AE014134-872|AAX52655.1|  690|Drosophila melanogaster CG14039-PE,
           isoform E protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 497 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 543


>AE014134-871|AAX52654.1|  721|Drosophila melanogaster CG14039-PF,
           isoform F protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 497 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 543


>AE014134-870|AAF52216.2|  721|Drosophila melanogaster CG14039-PA,
           isoform A protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 39  EATIKPRSSKTHCVLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGK 85
           E  I+ + S T  +  + N +   LL+ +      Y D+VPDYE  K
Sbjct: 497 EELIRSQDSATSDLKRSHNDKVEALLQKLAECNTRYSDMVPDYEQAK 543


>AY069492-1|AAL39637.1|  449|Drosophila melanogaster LD22082p
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 181 DPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLA 223
           D HQKI NAL+ +    K +  T +     +   IK  E+R+A
Sbjct: 286 DSHQKISNALTQLSTTEKGNVETFVAKTAEIFERIKNLETRVA 328


>AE014134-1435|AAF52625.2|  449|Drosophila melanogaster CG8282-PA
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 181 DPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLA 223
           D HQKI NAL+ +    K +  T +     +   IK  E+R+A
Sbjct: 286 DSHQKISNALTQLSTTEKGNVETFVAKTAEIFERIKNLETRVA 328


>BT022654-1|AAY55070.1|  140|Drosophila melanogaster IP07058p
           protein.
          Length = 140

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 21/73 (28%), Positives = 29/73 (39%)

Query: 175 MEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAK 234
           +E+ E+ P  K     +       T+ M LI        I+K S+S    CP  G+ K  
Sbjct: 45  LERTESSPRSKCRPLTALHNSPRTTNRMKLIMETRVRPAIVKKSKSEYNLCPSCGLVKDS 104

Query: 235 KLYKALHEPFLKK 247
            L     E  LKK
Sbjct: 105 ILNHQHAEQRLKK 117


>BT021418-1|AAX33566.1|  901|Drosophila melanogaster LD04461p
           protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 242 EPFLKKGQTKDKKDEFPDEDLTLEELEKIVNENQDI 277
           +P  K  + K K D+F DED    +L+ + NE  ++
Sbjct: 128 QPSKKNKKNKKKNDDFSDEDKPELDLDDLDNEEDEV 163


>AE014298-1652|AAF48069.1|  901|Drosophila melanogaster CG1703-PA
           protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 242 EPFLKKGQTKDKKDEFPDEDLTLEELEKIVNENQDI 277
           +P  K  + K K D+F DED    +L+ + NE  ++
Sbjct: 128 QPSKKNKKNKKKNDDFSDEDKPELDLDDLDNEEDEV 163


>AE014134-2403|AAF53335.1|  169|Drosophila melanogaster CG16888-PA
           protein.
          Length = 169

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 21/73 (28%), Positives = 29/73 (39%)

Query: 175 MEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSESRLAECPGFGITKAK 234
           +E+ E+ P  K     +       T+ M LI        I+K S+S    CP  G+ K  
Sbjct: 74  LERTESSPRSKCRPLTALHNSPRTTNRMKLIMETRVRPAIVKKSKSEYNLCPSCGLVKDS 133

Query: 235 KLYKALHEPFLKK 247
            L     E  LKK
Sbjct: 134 ILNHQHAEQRLKK 146


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,554
Number of Sequences: 52641
Number of extensions: 547768
Number of successful extensions: 1349
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 23
length of query: 278
length of database: 24,830,863
effective HSP length: 84
effective length of query: 194
effective length of database: 20,409,019
effective search space: 3959349686
effective search space used: 3959349686
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 61 (28.7 bits)