Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002482-TA|BGIBMGA002482-PA|IPR010994|RuvA domain 2-like,
IPR004579|DNA repair protein rad10
(278 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80216-7|CAB02283.2| 262|Caenorhabditis elegans Hypothetical pr... 120 2e-27
U40955-6|AAA81754.1| 539|Caenorhabditis elegans Hypothetical pr... 32 0.52
Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z36238-1|CAA85275.2| 400|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical ... 30 2.1
AC006671-4|AAF39917.1| 373|Caenorhabditis elegans Hypothetical ... 29 2.8
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical... 28 6.4
Z50016-8|CAA90315.1| 393|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical ... 28 8.5
>Z80216-7|CAB02283.2| 262|Caenorhabditis elegans Hypothetical
protein F10G8.7 protein.
Length = 262
Score = 120 bits (288), Expect = 2e-27
Identities = 66/202 (32%), Positives = 109/202 (53%), Gaps = 12/202 (5%)
Query: 52 VLVNKNQRGNPLLKHITSVPWEYDDIVPDYEVGKTICLLFLSLRYHNLNPDYIHNRLK-E 110
V+ + Q GNP+LK++ +V +E+ DI PD+E G T +++LS +YH +P+Y++ R+
Sbjct: 52 VVNRRRQEGNPVLKYVRNVRYEWGDIGPDFECGPTFGVVYLSFKYHKQHPEYVYTRINGN 111
Query: 111 LGKKYDLRVLLVQVDLKDPHASLKNLTRICLLTDITLMLAWNPEEAAKVVENYKIYENKP 170
+Y +VLL ++++P L+ L IC T ++ + EEAA+ +E +K + K
Sbjct: 112 AENRYRNKVLLGYCNMEEPRHVLRELNMICFREAWTFVVVYTVEEAAEYIELFKTTQKKE 171
Query: 171 -----------PDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKVSE 219
D M + I L++ + + KTDA L+ FGTL+ I SE
Sbjct: 172 ITIKKKAIDDGGDSSMSDERRRNREAAIGFLTAARSITKTDADRLLFHFGTLQAISTASE 231
Query: 220 SRLAECPGFGITKAKKLYKALH 241
+ ++ CPG G KAK L+ LH
Sbjct: 232 TSISACPGVGPIKAKNLHSFLH 253
>U40955-6|AAA81754.1| 539|Caenorhabditis elegans Hypothetical
protein F48B9.1 protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.52
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 152 NPEEAAKVVENYKIYE-NKPPDRIM---EKIENDPHQKIINALSSIKPVNKTDAMTLIKT 207
+P E V+E K +E NK P ++ + EN + +S + P + + L
Sbjct: 35 DPIENGIVIEEIKDHEENKSPISLIVSPDGSENSTEEFNSLNVSLLPPSERKPSRNLEDI 94
Query: 208 FGTLENIIKVSESRLAECPGFGITKAKKLYKALHEP---FLKKGQTKDK---KDEFPDED 261
TL+ + ++E +AK L+ L E +LKK +T + K +F DED
Sbjct: 95 DRTLDELQDLAEDAFLTAQMAQGNQAK-LFDKLFESSTVYLKKCETVPEDLTKQQFSDED 153
Query: 262 LTLEELEKIVNENQD 276
LEE+E+ V + ++
Sbjct: 154 GILEEIEEAVRDAEE 168
>Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical
protein C06C6.6 protein.
Length = 834
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Query: 158 KVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNKTDAMTLIKTFGTLENIIKV 217
K+ + YKI +I+ K+E+D K++ L+ E K
Sbjct: 524 KIKDTYKIASTARSAKILRKMESD--GKLVEKFKEFSSAVSKSLPLLVSLRKIAEEYKKD 581
Query: 218 SESRLAECPGFGITKA-KKLYKALHEPFLKKGQTKDKK---DEFPDEDLTLE 265
S S + E + + K + E F+KKG+ KK D P++ + E
Sbjct: 582 SSSEMNELKKLKVLQGLSKPFGDALENFVKKGEATQKKVNSDGTPEQKIQFE 633
>Z36238-1|CAA85275.2| 400|Caenorhabditis elegans Hypothetical
protein R74.2 protein.
Length = 400
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 225 CPGFGITKAKKLYKALHEPFLKKGQTK-DKKDEFPDEDLTLEELEKI 270
C G+ + + Y+ E K G+ K +KKD P EDL LE+LEK+
Sbjct: 230 CGGYNDDEDEDSYEDSDEENGKSGEAKINKKD--PLEDLELEDLEKL 274
>AF000198-4|AAB53058.2| 175|Caenorhabditis elegans Hypothetical
protein T28F2.2 protein.
Length = 175
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 140 CLLTDI---TLMLAWNPEEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPV 196
C TD+ + L PE ++ + Y+ Y+++ +++ + +PH II+A S
Sbjct: 75 CPSTDLEKEVVQLGLPPEHGIQLRKVYENYKSELREKVCSSVYREPHATIIDASPSSITF 134
Query: 197 NKTDAMTLIKTFGTLENIIKVS-ESRLAECPGFGIT 231
M + G++ N +K E+ L++ F T
Sbjct: 135 QADTQMYDVSMSGSMMNQLKNDVENALSKMKDFAET 170
>AC006671-4|AAF39917.1| 373|Caenorhabditis elegans Hypothetical
protein K08A2.4 protein.
Length = 373
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 154 EEAAKVVENYKIYENKPPDRIMEKIENDPHQKIINALSSIKPVNK 198
E A + K+YE KP DRI++K+ +KI + + K N+
Sbjct: 34 EYMAMLKSGRKVYEIKPDDRILKKVVMSEIEKIPDMWAGEKNTNR 78
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 238 KALHEPFLKKGQTKDKKDEFPDED 261
K ++E LKKG T DKKDE DED
Sbjct: 480 KIVNERILKKGNTFDKKDE-GDED 502
>AL110485-10|CAB60358.2| 304|Caenorhabditis elegans Hypothetical
protein Y46G5A.15 protein.
Length = 304
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 162 NYKIYENKPPDRIMEKIENDPHQKIINALSSIKPV-NKTDAMTLIKTFGTLENII--KVS 218
+Y Y+N+ D + +EN+P ++ +++PV N+T+ TF + + ++
Sbjct: 108 DYAQYQNRSHDDEVMILENEPKEQYPMPTETVEPVTNETEPEVANSTFEQQKRELTRELE 167
Query: 219 ESRLAECPGFGITKAKKLYKALHEPFLKKGQTKDKKDEFPDEDLTLE 265
+ LA+ I K L + E K + K K EF ++L L+
Sbjct: 168 DLELAKLRA-QIHHEKALMEIEEEERKTKLELKKKSLEFVQKELQLK 213
>Z50016-8|CAA90315.1| 393|Caenorhabditis elegans Hypothetical
protein T21C12.2 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 4 EIEDVFDELLAXXXXXXXXXXXXVDEISAQAGTSDEATIKPRSSKTHCVLVNKNQRG 60
E+ED+ D ++A + E S G+ AT++ H +L KN RG
Sbjct: 98 EVEDL-DSIIAHAKAAGATIVHDITEESDADGSIRYATLRTYGETDHTLLERKNYRG 153
>AF125971-5|AAD14765.1| 484|Caenorhabditis elegans Hypothetical
protein Y4C6B.2a protein.
Length = 484
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 122 VQVDLKDPHASLKNLTRICLLTDITLMLAWNPEEAAKVVENYKIYENKPPDRIMEKIEND 181
+Q D+K PH + +R ++ I + + + P + Y +Y + D I+ I+N
Sbjct: 223 IQHDMKKPH----HFSRSIIIAFIIIFIFYLPVS----MSGYFVYGSSLTDSIIPSIQNI 274
Query: 182 PHQKIINALSSI 193
Q I+N L S+
Sbjct: 275 NIQTIVNILISL 286
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.135 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,864,981
Number of Sequences: 27539
Number of extensions: 289660
Number of successful extensions: 718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 11
length of query: 278
length of database: 12,573,161
effective HSP length: 80
effective length of query: 198
effective length of database: 10,370,041
effective search space: 2053268118
effective search space used: 2053268118
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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