GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002480-TA|BGIBMGA002480-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site,
IPR001762|Disintegrin, IPR001590|Peptidase M12B, ADAM/reprolysin
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    54   1e-07
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       28   4.5  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 58/196 (29%), Positives = 80/196 (40%), Gaps = 44/196 (22%)

Query: 359 QLTLAHEIGHNFGSPHD--------YPSECRPGGQ-----QGNYIMFASATSGDRPNNSR 405
           +L +AHEIGH  G  HD        +   C P        Q  YIM  + ++     N R
Sbjct: 224 RLVVAHEIGHILGLIHDCNKKSCGDHSEACCPLSSSLCDAQELYIM--NPSNSYTYANLR 281

Query: 406 FSSCSTGNISAVLDAVRDGRKRNCLTASAG------AFCGNKIVEHGEECDCGYDDIECT 459
           FS CS   + ++++  +     +CL+  +         CGN IVE GEECDCG +D E  
Sbjct: 282 FSDCSILQLHSLVE--KKYVSLSCLSKPSEKSVLRLGTCGNGIVEDGEECDCG-EDCE-N 337

Query: 460 DRCCYPRQVGAYDRERNVTAKGCTRRADTECSPSQGPCCNAQTCRFVVAARNQTCREAAE 519
           + CC                K C     + C   Q  CC    C F  A     CR++  
Sbjct: 338 NPCC--------------DGKTCKLTKGSLCDDQQDACC--YQCHFKNA--GTLCRQSTN 379

Query: 520 -CSHAAVCSGDSADCP 534
            C     C+G S+ CP
Sbjct: 380 PCDKPEFCTGISSKCP 395


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 68  NKRHGHVGGCGITDEVVQWME-RIQNSGVDDE 98
           N  HG +  C ++  ++ W+E R    G+D E
Sbjct: 172 NVHHGGIASCALSYMLIGWLEMRFHKKGIDSE 203


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,575,314
Number of Sequences: 5004
Number of extensions: 141815
Number of successful extensions: 280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 3
length of query: 820
length of database: 2,362,478
effective HSP length: 79
effective length of query: 741
effective length of database: 1,967,162
effective search space: 1457667042
effective search space used: 1457667042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)