GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002480-TA|BGIBMGA002480-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site,
IPR001762|Disintegrin, IPR001590|Peptidase M12B, ADAM/reprolysin
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395     34   0.53 
04_03_1017 + 21747044-21748051                                         34   0.53 
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330...    33   1.2  
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    31   3.7  
06_01_1013 - 7931756-7935109                                           30   6.5  
03_06_0690 - 35571816-35572586                                         30   8.6  

>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
          Length = 794

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 693 VHTPSSNPKRPPARRLSET--LRGPMNTLRRMRGP--RGTPARHPQRRAR 738
           V  PSS P +PPA R S T  +R   +  RR R P    +PAR P   AR
Sbjct: 289 VMRPSSRPPQPPASRTSPTRRVRVDADNARRPRSPDRAASPARSPASPAR 338


>04_03_1017 + 21747044-21748051
          Length = 335

 Score = 33.9 bits (74), Expect = 0.53
 Identities = 17/48 (35%), Positives = 22/48 (45%)

Query: 690 CCAVHTPSSNPKRPPARRLSETLRGPMNTLRRMRGPRGTPARHPQRRA 737
           CC   +P   P  PP RR +     P +  RR   P  +PA  P+R A
Sbjct: 55  CCPPPSPDYTPASPPHRRAASPDYTPESPPRRAASPDYSPASPPRRAA 102



 Score = 30.7 bits (66), Expect = 4.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 692 AVHTPSSNPKRPPARRLSETLRGPMNTLRRMRGPRGTPARHPQRRA 737
           A  +P   P+ PP RR +     P    RR   P  +P+  P+R A
Sbjct: 172 AASSPDYTPESPPRRRAASPDYSPSTPPRRAASPDYSPSTPPRRAA 217


>07_03_0251 +
           15831712-15832127,15832203-15832344,15832692-15833056,
           15833134-15833293,15833699-15834036,15834138-15834315,
           15834454-15834987,15835176-15836291
          Length = 1082

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 24  EGKIIAKDGSYYVEHARRYFPPNNTKTRGHSVIYKDSDVIDPFANKRHGH 73
           +G++  KD    +E  R++    N + RGH + ++  D + P+    HGH
Sbjct: 785 QGRLNYKDSDELLEFCRKH----NIQVRGHCLFWEVEDSVQPWIRSLHGH 830


>06_02_0211 -
           13043968-13044646,13044752-13045037,13045903-13045979,
           13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 31.1 bits (67), Expect = 3.7
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 694 HTPSSNPKRPPARRLSETLRGPMNTLRRMRG-PRG---TPARHPQRRARTHKG-YAPP 746
           H    NP R PAR L  + R P   + R    PRG    P  +P R    H G YA P
Sbjct: 304 HRDYVNPPRGPARNLGPSDRAPPREMARYGSPPRGWGSDPKGYPARSPPDHAGRYADP 361


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 451 CGYDDIECTDRCCYPRQVGAYDRERNVTAKGC-TRRADTECSPSQGPCCNAQTCRFVVAA 509
           CG  DI C   C   RQ G +   R+     C    A+ + S S G      +C  V  A
Sbjct: 633 CGSKDIRCNQPCGKNRQCGMHACNRSCHPSPCDPPPANGDASSSTG---GRASCGQVCGA 689

Query: 510 RNQTCREAAECSHAAVCSGDSADCPE-PSAMPNHTKCNNGRRVQRVDMS 557
             + C+    C+  A C   S+ CP+     P    C+ GR    V  S
Sbjct: 690 PRRECKHT--CT--APCH-PSSPCPDLRCEFPMTIACSCGRITATVPCS 733


>03_06_0690 - 35571816-35572586
          Length = 256

 Score = 29.9 bits (64), Expect = 8.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 695 TPSSNPKRPPARRLSETLRGPMNTLRRMRGPRGTPARHPQRRARTHKGYAPPHTDG 750
           T SS+  RPP R   E    P+N        RG   +  QRR RT    A P TDG
Sbjct: 81  TSSSSHPRPPRRAHPEDALDPLNHSSAAAHRRG--QKPAQRRPRTAWIPAAPGTDG 134


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,622,696
Number of Sequences: 37544
Number of extensions: 1015271
Number of successful extensions: 2196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2187
Number of HSP's gapped (non-prelim): 14
length of query: 820
length of database: 14,793,348
effective HSP length: 88
effective length of query: 732
effective length of database: 11,489,476
effective search space: 8410296432
effective search space used: 8410296432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)