GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002480-TA|BGIBMGA002480-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site,
IPR001762|Disintegrin, IPR001590|Peptidase M12B, ADAM/reprolysin
         (820 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    27   2.0  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 723 RGPRGTPARHPQRRARTHKGYAPPHTDG 750
           +G +G PARHP+   +  KG   P  DG
Sbjct: 210 KGEKGEPARHPENYNKGQKG--EPGNDG 235


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,656
Number of Sequences: 2123
Number of extensions: 35491
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 2
length of query: 820
length of database: 516,269
effective HSP length: 70
effective length of query: 750
effective length of database: 367,659
effective search space: 275744250
effective search space used: 275744250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)