GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002480-TA|BGIBMGA002480-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site,
IPR001762|Disintegrin, IPR001590|Peptidase M12B, ADAM/reprolysin
         (820 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   7.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 192 HNVPSKKNEVDTKTREEI--LSLISHH 216
           +N PSK+++ D++ + +I   S+ SHH
Sbjct: 358 YNTPSKRSDYDSRPQYQIDKRSMGSHH 384


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,643
Number of Sequences: 429
Number of extensions: 10053
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 1
length of query: 820
length of database: 140,377
effective HSP length: 63
effective length of query: 757
effective length of database: 113,350
effective search space: 85805950
effective search space used: 85805950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)