GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002479-TA|BGIBMGA002479-PA|undefined
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    32   0.057
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   3.7  
SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein Nnf1|Schizosacch...    26   4.9  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   4.9  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   4.9  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   8.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   8.6  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   8.6  

>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 123 DGVRGVDSRNSGPTFVHCVLGTENTDVIYTRKIDAIVCPRPEG-KFNKSLY 172
           DG++ VD+ N   TF +  L  +N  V+Y   I    CPR     F +SL+
Sbjct: 38  DGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFLESLH 88


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 32  RLNEYIEHFETLDYDPDDLHHQHLRARRSTDSQRELRLDF 71
           +L+E ++H+  +     +L  Q + A+R  DS     L F
Sbjct: 107 KLSEELDHYRAIISSKRELRAQEMEAKRKQDSYNNPELKF 146


>SPAC29E6.04 |nnf1|SPAC30.08|kinetochore protein
           Nnf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 94  KVEGSQGQTHEVDSSHIYSGKLAAVTKFVDGVRGVDSRNSG 134
           +V+ S  Q  E+  +H+YS K   + K    +  +D  N G
Sbjct: 93  EVDISNKQPQEILKAHLYSHKRELLDKLNQDLLDIDKENEG 133


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 39  HFETLDYDPDDLHHQHLRARRSTDSQRELR 68
           H ETL      +HHQH++A        E R
Sbjct: 184 HLETLRRRNLSIHHQHIQAHEMAQESLETR 213


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 189 NANINLPLLWPLASSMFPVRHTSLIIR 215
           N +INL LLWP++ S   + +  L +R
Sbjct: 267 NQSINLSLLWPMSVSTNTLENYELQVR 293


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 164 EGKFNKSLYGVCRPRLCCSLIKQKPNANINLPLLWPLASSMFPV 207
           E  +  SL G C  +L       K   +I+  L+ P  SS FPV
Sbjct: 397 ENSYMSSLAGYCLQQLVSHEKLVKAACHIDKSLISPSPSSQFPV 440


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 125 VRGVDS-RNSGPTFVHCVLGTENT 147
           +R +D   N GP FVHC  G   T
Sbjct: 614 IRCIDKVPNDGPMFVHCSAGVGRT 637


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 10   YLYVTGLDSGTKLFCLIAASRVRLNEYIEHFETLDYDPD 48
            Y   + LD  + LF  + +S   L E+   +   DY PD
Sbjct: 1044 YFGSSSLDQSSPLFTGVLSSTAALPEWTSSYYLPDYPPD 1082


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 973,766
Number of Sequences: 5004
Number of extensions: 39267
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 9
length of query: 218
length of database: 2,362,478
effective HSP length: 70
effective length of query: 148
effective length of database: 2,012,198
effective search space: 297805304
effective search space used: 297805304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)