GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002479-TA|BGIBMGA002479-PA|undefined
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441     28   5.1  
01_01_0971 + 7669209-7669446,7671259-7671446                           28   6.8  

>05_07_0314 + 29162075-29163436,29163520-29163900,29164911-29165441
          Length = 757

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 169 KSLYGVCRPRLCCSLIKQKPNANINLPLLWPLA 201
           K L+ VC P LC +++  K  A+      WPL+
Sbjct: 722 KKLFPVCIPPLCNNIVSYKGKASDGWLRAWPLS 754


>01_01_0971 + 7669209-7669446,7671259-7671446
          Length = 141

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 101 QTHEVDSSHIYSGKLAAVTKFVDGVR-GVDSRNSGPTFVHCVLGTENTDVIYTRKIDAIV 159
           Q   V S H  + K+ + T      R GV + +  P    C++G E   +++T + + + 
Sbjct: 22  QLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRPPRIAECLIGDETGAIVFTARNEQVD 81

Query: 160 CPRP 163
             +P
Sbjct: 82  LLKP 85


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,113,080
Number of Sequences: 37544
Number of extensions: 243263
Number of successful extensions: 371
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 2
length of query: 218
length of database: 14,793,348
effective HSP length: 79
effective length of query: 139
effective length of database: 11,827,372
effective search space: 1644004708
effective search space used: 1644004708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)