GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002479-TA|BGIBMGA002479-PA|undefined
         (218 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    37   0.010
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    37   0.010
AF025454-6|AAY55838.1|   87|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
          protein DY3.7 protein.
          Length = 922

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 20 TKLFCLIAASRVRLNEYIEHFETLDYDPDDLHHQHLRARRSTDS 63
          T +FCL   +   LN +I++FETL+Y    + +Q  R +RS DS
Sbjct: 14 TLIFCLFFENVNGLNNFIDNFETLNYRATHVANQVTRRKRSIDS 57


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10
          protein.
          Length = 922

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 20 TKLFCLIAASRVRLNEYIEHFETLDYDPDDLHHQHLRARRSTDS 63
          T +FCL   +   LN +I++FETL+Y    + +Q  R +RS DS
Sbjct: 14 TLIFCLFFENVNGLNNFIDNFETLNYRATHVANQVTRRKRSIDS 57


>AF025454-6|AAY55838.1|   87|Caenorhabditis elegans Hypothetical
          protein F34D6.9 protein.
          Length = 87

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 23 FCLIAASRVR-LNEYIEHFETLDYDPDDLHHQHLRARRSTDSQR 65
          FC++     R   E IE F T +YDP+ L+++H  AR   ++++
Sbjct: 11 FCILPTIFARHRGERIE-FATDEYDPEALYNRHQLAREYIETEQ 53


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,264,359
Number of Sequences: 27539
Number of extensions: 213204
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 3
length of query: 218
length of database: 12,573,161
effective HSP length: 79
effective length of query: 139
effective length of database: 10,397,580
effective search space: 1445263620
effective search space used: 1445263620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)