GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002479-TA|BGIBMGA002479-PA|undefined
         (218 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   0.97 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   0.97 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   0.97 
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.8  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 38  EHFETLDYDPDDLHHQHLRARRSTDSQREL 67
           E F T DY  +D+H++ ++    T S  ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQSSAKV 310


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 38  EHFETLDYDPDDLHHQHLRARRSTDSQREL 67
           E F T DY  +D+H++ ++    T S  ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQSSAKV 310


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 38  EHFETLDYDPDDLHHQHLRARRSTDSQREL 67
           E F T DY  +D+H++ ++    T S  ++
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNILDTQSSAKV 310


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 185 KQKPNANINLPLLWPLASSMFPVRHTSLI 213
           ++K N N N  ++W L  S+ P  H   I
Sbjct: 10  RRKKNLNQNQMMIWALDCSIKPKDHNGSI 38


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 139 HCVLGTENTDVIYTRKIDAIVCPRPEGKFNKSL 171
           +C+  TE  + +   + + I+C  P G  + +L
Sbjct: 200 YCLTPTERLEALCWTQDEDIICSTPIGNLSHAL 232


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 139 HCVLGTENTDVIYTRKIDAIVCPRPEGKFNKSL 171
           +C+  TE  + +   + + ++C  P G  + +L
Sbjct: 147 YCLTPTERLEALCWTQDEDVICSTPIGNLSHAL 179


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 15  GLDSGTKLFCLIAASRVRLNEYIEHF 40
           G +   K F   + SR+ ++E ++HF
Sbjct: 241 GTNKNGKFFSRSSTSRIVISESLKHF 266


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,351
Number of Sequences: 429
Number of extensions: 2607
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 218
length of database: 140,377
effective HSP length: 55
effective length of query: 163
effective length of database: 116,782
effective search space: 19035466
effective search space used: 19035466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)