Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002478-TA|BGIBMGA002478-PA|IPR000649|Initiation factor
2B related, IPR011559|Initiation factor 2B alpha/beta/delta
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602... 357 7e-99
12_02_0420 - 18920511-18920717,18920968-18921209,18921786-189219... 71 1e-12
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777... 71 1e-12
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 48 1e-05
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 44 1e-04
01_05_0703 - 24404580-24406373 31 1.8
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 30 3.2
04_04_0005 + 22095107-22095210,22095347-22095431,22095553-220956... 28 9.8
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 28 9.8
>11_01_0728 +
6023361-6023495,6024880-6025212,6025306-6025361,
6025526-6025684,6025790-6025889,6026481-6026623,
6026728-6026833,6027139-6027277,6027363-6027631,
6027734-6027820
Length = 508
Score = 357 bits (878), Expect = 7e-99
Identities = 189/345 (54%), Positives = 238/345 (68%), Gaps = 8/345 (2%)
Query: 2 SLESIKYTRGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAV 61
+L+SI Y RGS + YI V+ DGW I M VRGAPAIAI L+LAV
Sbjct: 140 ALQSIVYHRGSLRLLDQRKLPLEVDYIDVKCSGDGWNAIRDMVVRGAPAIAIAAALALAV 199
Query: 62 ELS--PDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEI 119
E+S D + + KL YLVS+RPTAVN+ AA +L +L + + + I
Sbjct: 200 EVSGLEDFTGTPAEAAVFVSEKLEYLVSSRPTAVNLSDAATKLRSLVSRTAETEKDAKAI 259
Query: 120 FKERFIGSIEDMLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGTA 179
F + +I + E ML D+ DNKAIGS G E + + ++ + VLTHCNTGSLATAGYGTA
Sbjct: 260 F-QAYIDAAETMLVDDVSDNKAIGSHGAEFLKQKLEVSKDISVLTHCNTGSLATAGYGTA 318
Query: 180 LGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALMHTRKIH 239
LGVIR+LH+ LE FCTETRP+NQG+RLTA+ELVH+K+P+TLI D +ALM + I
Sbjct: 319 LGVIRALHSGGILEKAFCTETRPFNQGSRLTAFELVHDKVPATLIADSAAAALMKSGCIQ 378
Query: 240 AVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKINIEERP 299
AVIVGADR+AANGDTANKIGTY +AI AK+H V FYVAAP+TSID+SLP GE+I IEER
Sbjct: 379 AVIVGADRIAANGDTANKIGTYNLAISAKHHGVQFYVAAPITSIDLSLPSGEQIVIEERS 438
Query: 300 DREMTH----IGEHRIAAPGINCWNPSFDVTPASLIAGIITEKGV 340
E+ + +G+ ++AA GI+ WNP+FDVTPA+LI IITEKGV
Sbjct: 439 PNELLNSEGGLGK-QVAASGISVWNPAFDVTPANLITAIITEKGV 482
>12_02_0420 -
18920511-18920717,18920968-18921209,18921786-18921927,
18922012-18922164,18922845-18923243
Length = 380
Score = 70.9 bits (166), Expect = 1e-12
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 175 GYG-TALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALM 233
GY L V++ + ++L V CTE RP G R++ EL IP +++D V+ M
Sbjct: 207 GYSRVVLEVLKLAASNRKLFRVLCTEGRPDRTGLRMSN-ELAALGIPVKVLIDSAVAYSM 265
Query: 234 HTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKI 293
++ V VGAD V +G N +GTYQIA+VA + P YVAA P +K
Sbjct: 266 D--EVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQK- 322
Query: 294 NIEERPDREMTHIGEHRIAAP-GINCWNPSFDVTPASLIAGIITEKGVFAP 343
+ P G + P G+ + D TP + ++T+ GV P
Sbjct: 323 --DMTPAHRPIDFG---VPIPAGVEVETSARDYTPPQYLTLLLTDLGVLTP 368
>10_07_0069 -
12576197-12576290,12576658-12576851,12577671-12577796,
12577879-12577981,12578085-12578192,12579343-12579472,
12579685-12579966,12581046-12581200,12581306-12581358
Length = 414
Score = 70.9 bits (166), Expect = 1e-12
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 190 KRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALMHTRKIHAVIVGADRVA 249
KR VF E P +G + A ELV + + +T+I D V A++ +++ VIVGA +
Sbjct: 230 KRSFRVFVAEGAPRYKG-HVLAKELVEKGVQTTVITDSAVFAMIS--RVNMVIVGAHAIM 286
Query: 250 ANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKINIEE-RPDREMTHIGE 308
ANG +G +A+ A+ H VPF V A + P+ ++ + E + ++ GE
Sbjct: 287 ANGGVIAPVGMNMVALAAQRHAVPFVVVAGSHKLCPLYPHNPEVLLNELKSPSDLLDFGE 346
Query: 309 H--------RIAAPGINCWNPSFDVTPASLIAGIITEKGVFAP 343
+ P +N NP+FD P L++ IT+ G +P
Sbjct: 347 FSSCMNFSTQDGTPLLNVVNPTFDYVPPKLVSLFITDTGGHSP 389
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 47.6 bits (108), Expect = 1e-05
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 195 VFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALMHTRKIHAVIVGADRVAANGDT 254
V ++RP N+G L + LV + I T +S +MH ++ V +GA + +NG
Sbjct: 437 VVVVDSRPNNEGQALL-HRLVAKGISCTYTHINAISYIMH--EVTRVFLGASSILSNGAV 493
Query: 255 ANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKINIEERPDREMTHIGEHRIAAP 314
+ +GT +A+VA VP V I + ER D + H+ ++
Sbjct: 494 YSSVGTAAVAMVAHAFGVPVLVCCDPDVIS---------RVPERED--LCHL-KNCTYNE 541
Query: 315 GINCWNPSFDVTPASLIAGIITEKGVFAPDNL 346
+ N +D P+ ++ IITE G+ P ++
Sbjct: 542 NLQLLNLKYDTMPSDYVSMIITEYGMLPPTSV 573
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 44.4 bits (100), Expect = 1e-04
Identities = 68/292 (23%), Positives = 131/292 (44%), Gaps = 40/292 (13%)
Query: 64 SPDNESSKKNMRQEIEGKLNYLVSARPTAVN----IKLAADELINLANTLCADDS-ISAE 118
+P ++ +++ +I +++L+ RP +++ I+ + + L TL ++ S +
Sbjct: 326 TPPKKTLSRDLTAKISSYVSFLIECRPLSISMGNAIRFLKNRIAKLPLTLSESEAKASLQ 385
Query: 119 IFKERFIGSIEDMLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGT 178
+RFI E ++ D K I S AI K D D +LT+ GS +
Sbjct: 386 SDIDRFIN--EKIVVAD----KVIVS---HAITKVRDNDV---LLTY---GSSSVVEM-- 428
Query: 179 ALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALMHTRKI 238
++ H R V ++RP +G L LV + I T +S +MH ++
Sbjct: 429 ---ILDHAHELGRKFRVIVVDSRPKLEGQGLLR-RLVEKGINCTYTHINAISYIMH--EV 482
Query: 239 HAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVP---------FYVAAPLTSIDMSLPY 289
V +GA + +NG +++GT +A+VA +P F+ L SI +
Sbjct: 483 TRVFLGASSILSNGTVYSRVGTASVAMVAHAFGIPVLVCCEAYKFHERVQLDSICAN-EL 541
Query: 290 GEKINIEERPDR-EMTHIGEHRIAAPGINCWNPSFDVTPASLIAGIITEKGV 340
G+ I + P + ++ H+ ++ + N ++D TP+ ++ IIT+ G+
Sbjct: 542 GDPDVILKVPGKADLGHL-KNLADNENLQLLNLTYDATPSDYVSMIITDYGM 592
>01_05_0703 - 24404580-24406373
Length = 597
Score = 30.7 bits (66), Expect = 1.8
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 177 GTALGVIRSLHATKRLEHVFCTETRPYNQGARLTA---YELVHEKIPSTLIVDRMVSALM 233
G A+ R L A L HV + + G R +LVH+ P+ L++D S L
Sbjct: 148 GAAVARARELMAELGLRHVAGSRVGRVSGGERRRVSIGVDLVHD--PAVLLLDEPTSGLD 205
Query: 234 HTRKIHAVIVGADRVAANGDT 254
+H V + D AA+G T
Sbjct: 206 SGSALHIVKMLRDMAAAHGKT 226
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 29.9 bits (64), Expect = 3.2
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 47 GAPAIAIVGCLSLAVELSPDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLA 106
G A+A +G + A+ELSP ES+ E+ G+ L+S R ++ D + + A
Sbjct: 43 GGDAVAALGLVDAALELSPRMESA-----LELRGRA--LLSLRRYRDVAEMLRDYIPSCA 95
Query: 107 NTLCADDSISA 117
T DD++S+
Sbjct: 96 KTCSGDDTLSS 106
>04_04_0005 +
22095107-22095210,22095347-22095431,22095553-22095623,
22096613-22096727,22096884-22096963,22097302-22097386,
22098081-22098175,22098298-22098348,22098866-22098946,
22099659-22099731,22100057-22100134,22100224-22100256
Length = 316
Score = 28.3 bits (60), Expect = 9.8
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 149 AILKNIDGDSPVRVLT--HCNTGSLATAGYGTALGVIRSLHATKRLEHVFCTETRPYNQG 206
A+L+ + GDSP ++ H GS+A + A VIR+LH ++ V E +G
Sbjct: 133 AVLRTLYGDSPPAIILVGHSMGGSVAI--HVAAKKVIRNLHGLVVIDVV---EIEWSVKG 187
Query: 207 ARLTAYELVHEKIPSTLIVD 226
L + IPSTL D
Sbjct: 188 GPLRNIDSARVSIPSTLKYD 207
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 28.3 bits (60), Expect = 9.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 25 TRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAVELSPDNESSKKNMRQEI 78
TRY++ GV GW ++ K+ RGA +A A +L+ K+N+ +++
Sbjct: 146 TRYVQNGGVH-GWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDL 198
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,410,500
Number of Sequences: 37544
Number of extensions: 377969
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 11
length of query: 352
length of database: 14,793,348
effective HSP length: 83
effective length of query: 269
effective length of database: 11,677,196
effective search space: 3141165724
effective search space used: 3141165724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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