GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002478-TA|BGIBMGA002478-PA|IPR000649|Initiation factor
2B related, IPR011559|Initiation factor 2B alpha/beta/delta
         (352 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...   438   e-124
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    33   0.009
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            26   1.4  
AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450 CY...    24   7.3  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   9.6  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   9.6  

>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score =  438 bits (1079), Expect = e-124
 Identities = 211/346 (60%), Positives = 264/346 (76%), Gaps = 5/346 (1%)

Query: 1   MSLESIKYTRGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLA 60
           M+LE+IKY  G            +++YI V GV+DGW  I+KMQVRGAPAIAIVGCLSL 
Sbjct: 1   MTLEAIKYKSGQLQILDQLLLPAESKYIPVAGVKDGWSAIHKMQVRGAPAIAIVGCLSLV 60

Query: 61  VELSPDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEIF 120
           VE+      +K  +  EI   L YLV++RPTAVN+KLAAD++     +L A+++++ +  
Sbjct: 61  VEIYDKQYETKAALANEIGEHLQYLVTSRPTAVNLKLAADDVKGQVESLLANETVTVDGM 120

Query: 121 KERFIGSIEDMLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGTAL 180
           K+    +IE ML KDI DN+AIG  G   ++K +D   P+++LTHCNTGSLATAGYGTAL
Sbjct: 121 KQE---AIEYMLEKDISDNRAIGDNGANVLVKGVD--RPLKLLTHCNTGSLATAGYGTAL 175

Query: 181 GVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALMHTRKIHA 240
           GVIRS++    LEHV+CTETRPYNQGARLTAYELVH+K+P+TL+ D MV+AL+++RKI A
Sbjct: 176 GVIRSVNERNLLEHVYCTETRPYNQGARLTAYELVHDKLPATLVTDSMVAALLNSRKIDA 235

Query: 241 VIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKINIEERPD 300
           +IVGADRVAANGDTANKIGTYQ+A+VAK+H VPFYVAAP TSID+++  G  I IEERP+
Sbjct: 236 IIVGADRVAANGDTANKIGTYQMAVVAKHHGVPFYVAAPFTSIDVAIEDGSHIKIEERPE 295

Query: 301 REMTHIGEHRIAAPGINCWNPSFDVTPASLIAGIITEKGVFAPDNL 346
            E+THIG  RIAAPGI CWNP+FDVTPA LI GIITE+GV  P  L
Sbjct: 296 HELTHIGGQRIAAPGIGCWNPAFDVTPAELITGIITERGVLKPCEL 341


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 33.5 bits (73), Expect = 0.009
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 131 MLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGTALGVIRSLHATK 190
           +L +DI+DN+ I  F   A +  +  DSP  +LT           YG  +  I+ L    
Sbjct: 158 LLVEDINDNEPI--FKPFASVLEVAEDSPPGILTTLEAVDKDEGAYGQVVYYIQGLSEEN 215

Query: 191 RLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALMHT 235
            +  +  +  +   + AR   YE  H    + L VDR +   ++T
Sbjct: 216 NVFSISTSNGKGVVRLARALDYERQHFYHINVLAVDRAIQGRINT 260


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 306  IGEHRIAAPGINCWNP-SFDVTPASLIAGIIT--EKGVFAPDNLKS 348
            +G +  AA   NCWNP  +D   +S   G++T    G   P N+ S
Sbjct: 2748 VGAYLGAASANNCWNPLKWDWRSSSTWIGLLTGAVTGASIPFNMAS 2793


>AY176050-1|AAO19581.1|  522|Anopheles gambiae cytochrome P450
           CYP12F2 protein.
          Length = 522

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 217 EKIPSTLIVDRMVSALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAK 268
           EK PS      ++  L+   K  AVI+  D + A  DT +   T  +  +AK
Sbjct: 292 EKQPSNSANQSVLEKLLKINKHVAVIMSLDMLIAGIDTTSSGSTGVLYCLAK 343


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 262 QIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKIN 294
           Q+AI+ +Y   P+  A+P  + D+ LP G  +N
Sbjct: 465 QLAIL-RYARGPYQPASPPPTYDVGLPQGVVMN 496


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 262 QIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKIN 294
           Q+AI+ +Y   P+  A+P  + D+ LP G  +N
Sbjct: 465 QLAIL-RYARGPYQPASPPPTYDVGLPQGVVMN 496


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,490
Number of Sequences: 2123
Number of extensions: 12956
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 352
length of database: 516,269
effective HSP length: 65
effective length of query: 287
effective length of database: 378,274
effective search space: 108564638
effective search space used: 108564638
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)