GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002478-TA|BGIBMGA002478-PA|IPR000649|Initiation factor
2B related, IPR011559|Initiation factor 2B alpha/beta/delta
         (352 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical pr...   259   2e-69
Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical pr...    71   2e-12
AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical ...    33   0.23 
Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U23168-9|AAC38805.1|  196|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated p...    29   6.6  
AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.     29   6.6  
Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z70751-4|CAI91168.1|  497|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z70751-3|CAA94752.1|  529|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z70750-18|CAI91163.1|  497|Caenorhabditis elegans Hypothetical p...    28   8.7  
Z70750-17|CAA94749.1|  529|Caenorhabditis elegans Hypothetical p...    28   8.7  

>Z81030-7|CAB02711.1|  366|Caenorhabditis elegans Hypothetical
           protein C01G10.9 protein.
          Length = 366

 Score =  259 bits (634), Expect = 2e-69
 Identities = 137/345 (39%), Positives = 205/345 (59%), Gaps = 8/345 (2%)

Query: 3   LESIKYTRGSXXXXXXXXXXXQTRYIKVRGVEDGWKVINKMQVRGAPAIAIVGCLSLAVE 62
           L+S+K+   +           + +YI V GV D + VI  MQVRGAP IA+VG L L +E
Sbjct: 25  LDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLE 84

Query: 63  LSPDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANTLCADDSISAEIFKE 122
           +   +E   +++ Q    K+N+L+S+RPTAV+++ + + L  +  +    D +  E  + 
Sbjct: 85  IQKASELDSESIIQ----KINFLISSRPTAVDLRNSLNGLKPILESQDYSDVVKLEKCRS 140

Query: 123 RFIGSIEDMLTKDIHDNKAIGSFGCEAILKNIDGDSPVRVLTHCNTGSLATAGYGTALGV 182
             +    ++ T +   N+ +     + +L        + V+T CNTGSLAT  +GTALGV
Sbjct: 141 YLL----NVYTDEKLQNRILVWNAYQELLSAFPDKEKLTVMTICNTGSLATISWGTALGV 196

Query: 183 IRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRMVSALMHTRKIHAVI 242
           IR+LH+  RL+ V+  ETRPYNQG RLT+ EL+H ++P  LI D M +  M   ++  V+
Sbjct: 197 IRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVL 256

Query: 243 VGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKINIEERPDRE 302
            GAD VA NGDTANKIGTY +A++ K+H++ FY   P T+I+ ++  GE+I IEERP  E
Sbjct: 257 TGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAE 316

Query: 303 MTHIGEHRIAAPGINCWNPSFDVTPASLIAGIITEKGVFAPDNLK 347
           M  +    I       WNP+FDVTPA LI  I+T+ G + P+ L+
Sbjct: 317 MLRVNGVLIGNSECPVWNPAFDVTPAHLITKILTDFGNWPPEMLE 361


>Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1098.4 protein.
          Length = 305

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 170 SLATAGYG-TALGVIRSLHATKRLEHVFCTETRPYNQGARLTAYELVHEKIPSTLIVDRM 228
           ++ T  Y    L  I   H +    HV+ TE++P   G +L   EL    +P+TL++D  
Sbjct: 128 NILTHSYSKVVLETILDAHKSGYHLHVWVTESQPDASG-KLVFEELKKNGVPTTLVLDSC 186

Query: 229 VSALMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLP 288
           V  +M   +I AV+VGA+ V   G   NKIGT  + I+AK   VP YV A         P
Sbjct: 187 VGYVME--RIQAVLVGAEGVMETGGIINKIGTVNVCIIAKSRHVPVYVCAETIKFVREFP 244

Query: 289 YGEKINIEERPDREMTHIGEHRIAAPGINCWNPSFDVTPASLIAGIITEKGVFAPD 344
             +    +E   R  T + E       +   +P  D T    +  IIT+ G   P+
Sbjct: 245 LNQADIPQEFKYR--TSVIERN----NLELEHPDVDYTAPEFLTLIITDVGAMKPE 294


>AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical
           protein Y47H9C.7 protein.
          Length = 340

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 241 VIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGEKINIEERPD 300
           V++ A     +G      G +QIA++AK H VP YV AP   +    P+           
Sbjct: 221 VVLVAAAYFPDGSCLVPAGGHQIALLAKRHCVPVYVLAPFYKL---CPFFMTNPDSLHTF 277

Query: 301 REMTHIGEHRIAAPG-INCWNPSFDVTPASLIAGIITEKGVFAPDNLKSVK 350
           R  +   +    + G ++C +P+FD   + L+   ++      P ++  +K
Sbjct: 278 RSNSLPFDLSAKSAGLVDCLHPAFDCLQSDLVTLFVSNTSCVIPSHVNRLK 328


>Z75552-5|CAA99938.1|  208|Caenorhabditis elegans Hypothetical
           protein W04D2.5 protein.
          Length = 208

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 232 LMHTRKIHAVIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAAPLTSIDMSLPYGE 291
           +   R IHA I  AD +        +IGT Q+  +          A   +SID  LP  E
Sbjct: 24  IQQNRAIHASIRAADSIRDAHRQGTRIGTGQVETMEGTTGAGIQTAVNTSSIDARLPTAE 83

Query: 292 KI 293
            +
Sbjct: 84  TL 85


>U23168-9|AAC38805.1|  196|Caenorhabditis elegans Hypothetical
           protein B0228.1 protein.
          Length = 196

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 70  SKKNMRQEIEGKLNYLVSARPTAV---NIKLAADELINLANTLCADDSISAEIFKERFIG 126
           ++K + ++++ K   LV AR   +   +   AA+++   A       ++ AE   ERF+G
Sbjct: 90  AQKGLVEDLDEKSAKLVKARVKRMIVYSFDPAAEQIHKYATRPSMAFALIAETINERFVG 149

Query: 127 SIEDML 132
           S++D++
Sbjct: 150 SVKDLI 155


>U29096-3|AAA68407.1|  961|Caenorhabditis elegans Uncoordinated
           protein 45 protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 100 DELINLANTLCADDSISAEIFKERFIGSIEDMLTKDIHDN 139
           D L+ L N     DSI   I KE+ I  IE+      H++
Sbjct: 751 DSLLTLTNLASVSDSIRGRILKEKAIPKIEEFWFMTDHEH 790


>AF034085-1|AAD01976.1|  961|Caenorhabditis elegans UNC-45 protein.
          Length = 961

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 100 DELINLANTLCADDSISAEIFKERFIGSIEDMLTKDIHDN 139
           D L+ L N     DSI   I KE+ I  IE+      H++
Sbjct: 751 DSLLTLTNLASVSDSIRGRILKEKAIPKIEEFWFMTDHEH 790


>Z82277-2|CAB05250.1|  272|Caenorhabditis elegans Hypothetical
           protein LLC1.2 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 90  PTAVNIKLAADELINLANTLCADDSISAEIFKE 122
           PT V+ K  A +  N+A +L  +D++SA++FK+
Sbjct: 23  PTCVDAKFQACQY-NMAQSLGLNDTVSAQLFKD 54


>Z70751-4|CAI91168.1|  497|Caenorhabditis elegans Hypothetical
           protein F11A3.2b protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 241 VIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAA 278
           +I+G   + ANG  A + G   + + A ++++P  V A
Sbjct: 401 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVA 438


>Z70751-3|CAA94752.1|  529|Caenorhabditis elegans Hypothetical
           protein F11A3.2a protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 241 VIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAA 278
           +I+G   + ANG  A + G   + + A ++++P  V A
Sbjct: 433 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVA 470


>Z70750-18|CAI91163.1|  497|Caenorhabditis elegans Hypothetical
           protein F11A3.2b protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 241 VIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAA 278
           +I+G   + ANG  A + G   + + A ++++P  V A
Sbjct: 401 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVA 438


>Z70750-17|CAA94749.1|  529|Caenorhabditis elegans Hypothetical
           protein F11A3.2a protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 241 VIVGADRVAANGDTANKIGTYQIAIVAKYHDVPFYVAA 278
           +I+G   + ANG  A + G   + + A ++++P  V A
Sbjct: 433 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVA 470


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,886,471
Number of Sequences: 27539
Number of extensions: 316892
Number of successful extensions: 716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 14
length of query: 352
length of database: 12,573,161
effective HSP length: 82
effective length of query: 270
effective length of database: 10,314,963
effective search space: 2785040010
effective search space used: 2785040010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)