GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002477-TA|BGIBMGA002477-PA|undefined
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   2.9  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  

>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)

Query: 41  CLAEVPEDKCADLRHNNSDLIHKCHNDR 68
           C + +P  +CAD+  N+S LI+K ++ R
Sbjct: 366 CASVIP--RCADINDNSSYLIYKNYDSR 391


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 41  CLAEVPEDKCADLRHNNSDL 60
           CL  VP+ +C DL+   +DL
Sbjct: 253 CLLSVPQIECGDLKFLQTDL 272


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.133    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,603
Number of Sequences: 5004
Number of extensions: 26496
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 2
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)