Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002477-TA|BGIBMGA002477-PA|undefined
(153 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0812 - 21444112-21444273,21444374-21444488,21445369-214454... 29 1.6
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495... 29 1.6
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 27 8.7
12_01_0714 + 6223269-6226250 27 8.7
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 27 8.7
04_01_0397 - 5206055-5207106,5207885-5207903 27 8.7
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291... 27 8.7
>08_02_0812 -
21444112-21444273,21444374-21444488,21445369-21445487,
21446589-21446757,21447082-21447233,21447349-21447492,
21447575-21447687,21448265-21448316,21448408-21448494
Length = 370
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 35 ELWCYKCLAEVPEDKCADLRHNNSDLIHKCHNDRRMCMVKRF 76
E W +K + + H+N L+H DRR CM RF
Sbjct: 168 EPWRFKHDRHHAKTNMLNFGHSNLYLLHNLQVDRRYCMATRF 209
>03_02_0014 +
4955759-4956106,4956229-4956277,4956372-4956579,
4956700-4956874,4956981-4957046,4957150-4957263,
4957366-4957482,4957589-4957715,4957826-4958112,
4958209-4958399,4958937-4959022,4959117-4959193,
4959330-4959473
Length = 662
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 108 VIGERTKLYACTSCCSTSLCNYGSGAGKAIFFKNIV-TVLILLSIAL 153
++G T Y T S S NY +G A+ NIV ++++LL++ L
Sbjct: 390 IVGSMTSCYVATGSFSRSAVNYMAGCQTAV--SNIVMSIVVLLTLEL 434
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 75 RFSYTTSTENSTTALKMWALERNCTKHCEPGCIVI-GERTKLY-----ACTSCCSTSLCN 128
R ++ E ST A KM + C K C+ GE L+ C SC S +C
Sbjct: 139 RICFSGENEGSTKAAKMLPCKL-CNKKYHRSCLKNWGEHRDLFHWSSWVCPSCRSCEVCR 197
Query: 129 YGSGAGKAIFFK 140
K +F K
Sbjct: 198 RPGDPNKLMFCK 209
>12_01_0714 + 6223269-6226250
Length = 993
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 63 KCHNDRRMCMVK-RFSYTTSTENSTTALKMWALERNCTKHCEPGC 106
+CH D+ +++ + S+ + + +TA + W +C + GC
Sbjct: 22 RCHPDQASALLRLKHSFNATAGDYSTAFQSWVAGTDCCRWDGVGC 66
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 35 ELWCY---KCLAEVPEDKCADLRHNNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKM 91
ELW + K EV E K D+ H + + KC D ++C ++ F S T++ K
Sbjct: 1321 ELWNHSDWKTYKEVAE-KMLDIMHKAN--LMKCQVDAKLCALRSFITFLSVCTGTSSYKK 1377
Query: 92 WAL 94
+ L
Sbjct: 1378 FGL 1380
>04_01_0397 - 5206055-5207106,5207885-5207903
Length = 356
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 37 WCYKCLAEVPEDKCADLRHNNSDLIHK 63
W Y+CLA+V D+ H ++ K
Sbjct: 284 WIYRCLADVGSLHSFDMEHETEEIARK 310
>03_06_0096 -
31627332-31627570,31628467-31628743,31628963-31629118,
31629205-31629381,31629543-31629745,31630680-31630995
Length = 455
Score = 26.6 bits (56), Expect = 8.7
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 42 LAEVPEDKCADLRH-NNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKMWALERNCTK 100
L EVPE + + S L+H +D + RF+ T + + + ++ T
Sbjct: 121 LPEVPEQNLSVQKVVYKSSLLHLGDDDSSRTEISRFNSFTGYQTLNEREESFKMKELTTL 180
Query: 101 HC----EPGCIVIGERTKLYACTSCCSTSLCNYGSG 132
HC E G + + K Y + + C +G G
Sbjct: 181 HCGFYNENGGFKVSDVDKDYMRSCSVVVATCAFGGG 216
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.133 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,532,133
Number of Sequences: 37544
Number of extensions: 175596
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 7
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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