Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002477-TA|BGIBMGA002477-PA|undefined
(153 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 29 1.7
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 29 1.7
SB_12159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 29 2.2
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 29 2.2
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015) 28 2.9
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 2.9
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8) 27 6.8
SB_38886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 9.0
SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046) 27 9.0
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 95 ERNCTKHCEPGCIVIGERTKLYAC 118
ER+C+ C G ++GE + Y+C
Sbjct: 175 ERSCSVKCSNGTAIVGESSNAYSC 198
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 48 DKCADLRHNNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKMWALERN-CTKHCEPGC 106
+KC D ++ L C C+ T T+ A + N C K C PG
Sbjct: 525 EKCPDGQYARDTLCQMCDQSCATCV------DTGTKCLKCASGYYLNGTNQCLKDCGPGY 578
Query: 107 IVIGERTKLYACTSCCS 123
+ G +TK C S C+
Sbjct: 579 YLNGAQTKCLKCDSNCA 595
>SB_12159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 34 NELWCYKCLAEVPEDKCADLR 54
+ELW Y C+ + PEDKC D R
Sbjct: 149 DELWGY-CVFDRPEDKCKDKR 168
>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 764
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 68 RRMCMVKRFSYTTSTENSTTALKMWALERNCTKHCE 103
+++C VK++ Y ++ TA + +ER KHC+
Sbjct: 595 QKLCTVKKYRYLRLDGSTPTAKRQSLVERFNAKHCQ 630
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 100 KHCEPGCIVIGERTKLY---ACTSCCSTSLCNYGSGAGK 135
KHC C+ G + + CT C+ S CN AGK
Sbjct: 71 KHCRQKCLSSGCKKMVCNAAKCTQMCARSRCNMECNAGK 109
>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
Length = 513
Score = 28.3 bits (60), Expect = 2.9
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 34 NELWCYKCLAEVPEDKCADLRHNNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKMWA 93
+ L C+ C +EV +C+ H+ + +C ND+ C ++SYT + W
Sbjct: 19 SSLNCHSCRSEVGFLECS---HDKIE--EQCKNDQS-C--GKYSYTYGGND------YWQ 64
Query: 94 LERNCTKHCEPGCIVIGERTKLYACTSCCSTSLCN 128
TK C + + + K CC T LCN
Sbjct: 65 NGCIDTKECSSSEMCLKDSQKDNCVVYCCDTDLCN 99
>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 726
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 93 ALERNCTKHCEPGCIVIGERTKLYACTSCCSTSLCNYGS 131
A+E +C K C+PG I TK C SC C+ GS
Sbjct: 380 AIESHCGKPCKPG--YIRRMTKAKCCWSC---EWCSLGS 413
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/65 (21%), Positives = 25/65 (38%)
Query: 40 KCLAEVPEDKCADLRHNNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKMWALERNCT 99
KC + KC + +H C + C+ +R ++ T + + CT
Sbjct: 1881 KCHVDPTTVKCRTPCNAKLKCLHTCAGNCNSCLQQRVHEQCKSKCDRTLFCGHSCQEPCT 1940
Query: 100 KHCEP 104
K+C P
Sbjct: 1941 KNCPP 1945
>SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8)
Length = 625
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 54 RHNNSDLIHKCHND--RRMCMVKRFSYTTSTENS--TTALKMWALERNCTKH 101
R L H+ + + R C +++ Y + TEN T L +W + CT H
Sbjct: 559 RFKRKSLQHELYGEQVRIECDLRQKRYYSETENQFRTDKLDLWGTQVQCTAH 610
>SB_38886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 55 HNNSDLIHKCH-NDRRMCMVKRFSYTTSTENSTTALKMWALERNCTKHC 102
H+N+ H H N R C + ++ TT +N+T M L N T+ C
Sbjct: 18 HDNTTR-HMLHDNTTRQCYMTHYT-TTLHDNATRQCYMTTLHDNTTRQC 64
>SB_32229| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 389
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 70 MCMVKRFSYTTSTENSTTALKMWALERNCTKHCEPGCIVIGERTKLYAC 118
MC + FS + T+ S L +LER T C+ +++ R C
Sbjct: 103 MCRIVSFSQSVGTKASILILTALSLERYLTV-CKSNLVIVTARNTCIIC 150
>SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046)
Length = 641
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 55 HNNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKMW 92
H N + C N+ C+V+RF ++ +E+ ++ + W
Sbjct: 137 HENEEKAITCCNEGE-CLVRRFCFSALSESGISSSQKW 173
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 93 ALERNCTKHCEPGCIVIGERTKLYACTSCCSTSLCNYGSGA 133
A +C + C GC + CT C T C++ A
Sbjct: 154 ASAESCNQDCTRGCQLDCSNENTADCTQECKTGSCSFNCAA 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.133 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,446,836
Number of Sequences: 59808
Number of extensions: 226050
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 16
length of query: 153
length of database: 16,821,457
effective HSP length: 76
effective length of query: 77
effective length of database: 12,276,049
effective search space: 945255773
effective search space used: 945255773
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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