GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002477-TA|BGIBMGA002477-PA|undefined
         (153 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    31   0.48 
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   1.9  
U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical...    28   2.6  
Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U39648-2|AAM15606.1|  166|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF537097-1|AAN60468.1|  110|Caenorhabditis elegans PHF-5 protein.      27   5.9  
AF537096-1|AAN60467.1|  110|Caenorhabditis elegans PHF-5 protein.      27   5.9  
AC026301-14|AAP13738.1|  110|Caenorhabditis elegans Phd finger f...    27   5.9  
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    27   5.9  
AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical...    27   7.8  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    27   7.8  

>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 86   TTALKMWALERNCTKHCEPGCIVIGERTKLYACT--SCCSTSLCNYGSGAG 134
            TTA+ ++ +E N  + C+P C     +  +  C+  S CS S+C+   G+G
Sbjct: 1829 TTAIPVFIIELNPGQTCDPSC---AYQPCMQRCSGGSSCSNSICSCPQGSG 1876


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 7   NVAVRKKGYCDLLRDSVH-VTSAAARPNNELWCYKCLAEVPEDKCADLRHNNSDLIHKCH 65
           NV  + +  C+L ++SV  +     R   ++  YK  AE+   K  DL   N +L  K H
Sbjct: 552 NVLAQYRSECELYQNSVSSLQMDRDRLRKDVDLYKGKAEILFTKFGDLVKTNDELEKKAH 611

Query: 66  NDRRMCMVKRFSYTTSTENSTTALKMWALER 96
                    R +   S    T    + A+ER
Sbjct: 612 QKMLEADNLRKTVEFSNMEMTNVKALMAMER 642


>U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical
           protein T22F7.1 protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 64  CHNDRRMCMVKRFSYTTSTENSTTALKMWALERNCTKHCEPGCIVIGERTKLYACTSCC- 122
           CH    M ++  +  +  T   +  L +W + + C   C   C +         C SCC 
Sbjct: 403 CHFTGSMALLTMYFLSNDT---SLHLIIWLVAKFCASCCYIFCFIYAAELFPTWCRSCCI 459

Query: 123 --STSLCNYGSGAGKAIF 138
              ++ CN G+     IF
Sbjct: 460 GVCSTCCNIGAIVAPHIF 477


>AF016686-13|AAB66233.1|  470|Caenorhabditis elegans Hypothetical
           protein R07C3.3 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 56  NNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKMWALERNCTKHCEPGCIVIGERTKL 115
           N+S L  K   DR + + KR +    T + +   + +  +R  T+H + G +++G++ +L
Sbjct: 22  NSSYLDPKLSVDRELAVYKRITEALRTVDRSCEEQGFYCKRPETQHVDCGRVLVGDKIQL 81

Query: 116 YA 117
            A
Sbjct: 82  RA 83


>Z36752-2|CAA85324.1|  371|Caenorhabditis elegans Hypothetical
          protein F35H8.2 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 22 SVHVTSAAARPNNELWCYKCLAEVPEDKCADLRHNNSDLIHKCHNDRRMCMVKRFSY 78
          S H+    A PNNE+ C     +  ED    +   N  L+   HNDR    ++R  Y
Sbjct: 35 SFHIFVPIA-PNNEIDCAIMFNKSSEDYLTYIE--NRTLLETTHNDRNCFQIRRRRY 88


>Z81041-9|CAJ55253.1|  824|Caenorhabditis elegans Hypothetical
           protein C27A7.1b protein.
          Length = 824

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 22  SVHVTSAAARPNNELWCYKCLAEVPEDKCADLRHNNSDLIHKCHNDRRMCMVKRFSYTTS 81
           SV +T+ A  P N       +    ++ C     +NS ++ +  ND R  +++  S   +
Sbjct: 587 SVKLTNCAFSPTN-------IPLYSDNHCFQNYCDNSVIVSRKGNDARRAIIEVLSRDEA 639

Query: 82  TENSTTALKMWALERNCTKHCEPGCIVIGERTKL 115
           +  S         + NC  H   G + I + ++L
Sbjct: 640 SNPSNFTFLNAKYQSNCPSHIPTGSLTIRQNSQL 673


>Z81041-8|CAB02784.1|  829|Caenorhabditis elegans Hypothetical
           protein C27A7.1a protein.
          Length = 829

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 22  SVHVTSAAARPNNELWCYKCLAEVPEDKCADLRHNNSDLIHKCHNDRRMCMVKRFSYTTS 81
           SV +T+ A  P N       +    ++ C     +NS ++ +  ND R  +++  S   +
Sbjct: 592 SVKLTNCAFSPTN-------IPLYSDNHCFQNYCDNSVIVSRKGNDARRAIIEVLSRDEA 644

Query: 82  TENSTTALKMWALERNCTKHCEPGCIVIGERTKL 115
           +  S         + NC  H   G + I + ++L
Sbjct: 645 SNPSNFTFLNAKYQSNCPSHIPTGSLTIRQNSQL 678


>U39648-2|AAM15606.1|  166|Caenorhabditis elegans Hypothetical
           protein T13C5.7 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 79  TTSTENSTTALKMWALERN-CTKHCEPGCIVIGERTKLYACTSCCSTSLCNYGSGAGKAI 137
           TT+   +TT +       N C K  +P C+  G  T L  C +     +  Y  GA  A+
Sbjct: 35  TTTVATTTTTVTEPPFPCNVCQKVYDPACMGFGIPTLLTGCPTAAEAGI-EYALGAVLAL 93

Query: 138 F 138
           F
Sbjct: 94  F 94


>AF537097-1|AAN60468.1|  110|Caenorhabditis elegans PHF-5 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 93  ALERNCTKHCEPGCIVIGERTKLYACTSCCSTSLCNYGSGAGKAI 137
           A+ R C K C+  C++     +   CT       CNYGS  G+ +
Sbjct: 18  AIGRLCEK-CDGRCVICDSHVR--PCTLVRICEECNYGSYQGRCV 59


>AF537096-1|AAN60467.1|  110|Caenorhabditis elegans PHF-5 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 93  ALERNCTKHCEPGCIVIGERTKLYACTSCCSTSLCNYGSGAGKAI 137
           A+ R C K C+  C++     +   CT       CNYGS  G+ +
Sbjct: 18  AIGRLCEK-CDGRCVICDSHVR--PCTLVRICEECNYGSYQGRCV 59


>AC026301-14|AAP13738.1|  110|Caenorhabditis elegans Phd finger
           family protein 5 protein.
          Length = 110

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 93  ALERNCTKHCEPGCIVIGERTKLYACTSCCSTSLCNYGSGAGKAI 137
           A+ R C K C+  C++     +   CT       CNYGS  G+ +
Sbjct: 18  AIGRLCEK-CDGRCVICDSHVR--PCTLVRICEECNYGSYQGRCV 59


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 36  LWCYKCLAEVPEDKCA-DLRHNNSDLIHKCHNDRRMCMVKRFSYTTSTENSTTALKMWAL 94
           ++C  C A++ +     + R N   +I  C  +++    K+   +T+TE+    +K W  
Sbjct: 175 IFCPVCRAQLTDSNTIHNYRENVQLMIKNCKKNQKTLKNKKRRSSTTTEDVQKTIKRWHE 234

Query: 95  ER 96
           E+
Sbjct: 235 EQ 236


>AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical
           protein Y105C5A.17 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 121 CCSTSLCNYGSGAGKAIFFKNIVTVLILLSI 151
           CC   LCN G    K  F   ++TVL ++ I
Sbjct: 221 CCQGYLCNSGMSFSKTEFSSLLLTVLSVIYI 251


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 96  RNCTKHCEPGCIVIGERTKLYACTSCCSTSLCNYGSG 132
           R C   CEP C       +  ACT  C  ++C    G
Sbjct: 120 RTCGSSCEPSCTT----PRPQACTMQCIVNVCQCSEG 152


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.133    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,950,690
Number of Sequences: 27539
Number of extensions: 163712
Number of successful extensions: 518
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 14
length of query: 153
length of database: 12,573,161
effective HSP length: 75
effective length of query: 78
effective length of database: 10,507,736
effective search space: 819603408
effective search space used: 819603408
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)