GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002476-TA|BGIBMGA002476-PA|undefined
         (441 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.3  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   7.5  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 351  PSGSVVDASALGSAIEVFLRKSSIVDSGPSTSSVVETKEITAKTRDVPPKARDKPG 406
            PSG    +S   +A++    K+    +   T S      + A T ++P  A   PG
Sbjct: 980  PSGGKKGSSHPLAALQKLCDKTE-THTNNRTHSATSNSSVNANTNNIPTNAGTTPG 1034


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 144 DSGSKKGPPAIETFGSTHNLQLDI 167
           D+G+ KG P + +    HN QL +
Sbjct: 410 DAGTFKGIPRLASLNLGHNSQLTL 433


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,427
Number of Sequences: 317
Number of extensions: 3629
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 441
length of database: 114,650
effective HSP length: 59
effective length of query: 382
effective length of database: 95,947
effective search space: 36651754
effective search space used: 36651754
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)