Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002476-TA|BGIBMGA002476-PA|undefined
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.56
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 29 0.98
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 29 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 3.0
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 28 3.0
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 3.0
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 5.2
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 27 5.2
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 27 6.9
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 9.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.56
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 4/144 (2%)
Query: 294 ASSLREKPAESGTTWFARRHQTLATKNQENEPKKAKVTFAADSKPAPGDVATV-VWDKPS 352
A+S+ + S ++W + +T + + A+ S + VAT D +
Sbjct: 942 AASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSST 1001
Query: 353 GSVVDASALGSAIEVFLRKSSIVDSGPSTSSVVETKEITAKTRDVPPKARDKPGPSRAAE 412
S+ AS GS+ + +S+ DS STSSV + T + + S A
Sbjct: 1002 SSIAAASVTGSSTSS-VATASVTDS--STSSVATASATDSSTSSIAVASVTGSSTSSVAT 1058
Query: 413 RWYSNKPEEEEVSESCDASLCTSL 436
++ + S SL +S+
Sbjct: 1059 ASATDSSTSSVATASITGSLSSSI 1082
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.98
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 252 DTDLHLMLNALTSSAT-----EIDRCGKPERPGMRRLSDNMRSSSFDASSLREKPAESG- 305
+ D L+ NA T + T EI R P + + + + D S + E + S
Sbjct: 76 NVDCVLIFNAKTKTFTLEHIDEIARLNALRNPKVSKTVPSNAITQSDNSQISESKSTSQS 135
Query: 306 --TTWFARRHQTL--ATKNQENEPKKAKVTFAADSKPAPGDVATVVWDKPSGSVVDASAL 361
TT RR + A+K+ + +P + + A S P + T D+P V++
Sbjct: 136 AVTTNSTRRKEKELEASKDGKIKPSSSNTRYPAISSKGP--ITTDTNDEPDMEVMELDDF 193
Query: 362 GSAIEV-FLRKSSIVDSGPSTSSVVETKEITAKTRDVPPKARDKPGPSRAAERWYSNKPE 420
+E+ F ++ + +D PST S +K I+ R + + RD S A S+ E
Sbjct: 194 AKELELGFDQEFNSIDD-PSTVSQTASKPIS--LRGLSSQERDY--ASSAQAEGISSASE 248
Query: 421 EEE 423
+E+
Sbjct: 249 DED 251
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 320 NQENEPKKAKVTFAADSKPAPGDVATVVWDKPSGSVV 356
N+E+ + D PAPGD+ T+ +K GSVV
Sbjct: 260 NEEDSELDSDSASPVDDSPAPGDIITIP-EKDKGSVV 295
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 3.0
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 4/154 (2%)
Query: 244 SNTGVVCTDTDLHLMLNALTSSATEIDRCGKPERPGMRRLSDNMRSSSFDASSLREKPAE 303
+N+ + T L ++ TSS+ S ++ SSS +SSL
Sbjct: 96 TNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTT 155
Query: 304 SGTTWFARRHQTLATKNQENEPKKAKVTFAADSKPAPGDVATVVWDKPSGSVVDASALGS 363
S + + + T + + + + AA + +A+ S A+A S
Sbjct: 156 SSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLAS----SSLNSTTSATATSS 211
Query: 364 AIEVFLRKSSIVDSGPSTSSVVETKEITAKTRDV 397
++ +S S ++SS+ T TA + +
Sbjct: 212 SLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 117 ISRVPQALFGRGRRESIAAFPALGRRRDSGSKKGPPAIETFGSTHNLQLDIMDDIVQARK 176
I+ + +L G+G++ + F A GR G K I G N+ L ++ + +
Sbjct: 462 INSLSLSLQGKGKQSEVRVFAACGRETRVGRWKTLRGIPNSGFVFNIPLTVIPSVTDGDE 521
Query: 177 V 177
+
Sbjct: 522 I 522
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.9 bits (59), Expect = 3.0
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 314 QTLATKNQENEPKKAKVTFAADSKPAP-GDVATVVWDKPSGSVVDASALGSAIEVFLRKS 372
+T+ N + P + ++ + +P +VA V +KP +V+ S L ++ KS
Sbjct: 310 KTIQLLNNQEIPSEQQIISVDKATESPVQEVAVDVNEKPVDEIVEPSKLQMENKLPSEKS 369
Query: 373 SIVDSGPSTSSVVETKEITAKTRDVPPKARDKPGPSRAAERW 414
+D + + E T P K + P ++E W
Sbjct: 370 PTIDRTGVEAPLFELSVSMPLTLIPPSKFSEPVKPELSSEAW 411
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 375 VDSGPSTSSVVETKEITAKTRDVPPKARDKPGPSRA 410
VDS S + ++ I+ + +PP ARDKP A
Sbjct: 9 VDSVGSVTEKLQKTNISRPRKYIPPFARDKPSAGAA 44
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 260 NALTSSATEIDRCGKPERPGMRRLSDNMRSSS 291
N SA ++ KP P M R S ++SSS
Sbjct: 214 NLALESADNVENVSKPINPRMERFSSEVKSSS 245
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 6.9
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 315 TLATKNQENEPKKAKVTFAADSKPAPGDVATVVWDKPSGSVVDASALGSAIEVFLRKSSI 374
+ A N + +K+T + +P + + VV+A+++ A E +S
Sbjct: 97 SFADNNSFDNVNSSKLTNPSPVQPNIVKSESEPANSKQNEVVEATSVEKAKENVAHESGT 156
Query: 375 VDSGPSTSSVVETKE-ITA-----------KTRDVPPKARDKPG-----PSRAAERWYSN 417
+SG STS+ K+ +TA K + PP R+K G P R+ W+ N
Sbjct: 157 PESGGSTSAPKSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQN 216
Query: 418 K 418
+
Sbjct: 217 R 217
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 275 PERPGMRRLSDNMRSSSFDASSLREKPAESGTTWFARRHQTLATKNQENEPKKAK 329
P+ +R D+ + SFD S R+ + + W++ +H+ + + +P +K
Sbjct: 461 PKMIRRKRQMDSKKYFSFDKESDRQVIDQVLSDWYSGKHELVQQSHSYKKPSDSK 515
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,473
Number of Sequences: 5004
Number of extensions: 74279
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 10
length of query: 441
length of database: 2,362,478
effective HSP length: 75
effective length of query: 366
effective length of database: 1,987,178
effective search space: 727307148
effective search space used: 727307148
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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