GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002475-TA|BGIBMGA002475-PA|IPR000884|Thrombospondin,
type I
         (300 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.91 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   4.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 6/30 (20%)

Query: 150 NWCPDGYCNN------NTNTYTRLLGNGWT 173
           +WC    C N      N N Y  L G GWT
Sbjct: 101 DWCSTNPCENQATCVQNKNQYQCLCGVGWT 130


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 66  GSSCAATRDIRSDLCHRQQSRLIPYL----HANESNHCEISCV 104
           G  C   +DI S L  R++ ++ P++    H N+    +++ V
Sbjct: 162 GIQCVKKKDIESALRLREEIKVDPFMTGFSHRNQPTSIDLNAV 204


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 141 QCNSSDTTCNWCPDGYCNNN 160
           +CN    T   CPDG   N+
Sbjct: 57  ECNDGQITEKLCPDGMVFND 76


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 87  LIPYLHANESNHCEISCV 104
           L+ Y+  NE N C   CV
Sbjct: 32  LVEYVLLNEDNPCARKCV 49


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,985
Number of Sequences: 317
Number of extensions: 3495
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 300
length of database: 114,650
effective HSP length: 56
effective length of query: 244
effective length of database: 96,898
effective search space: 23643112
effective search space used: 23643112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)