GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002475-TA|BGIBMGA002475-PA|IPR000884|Thrombospondin,
type I
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    28   1.4  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    27   4.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   5.7  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    26   7.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   7.6  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 197 IALRERKRDKPILELSKHSKKFDISS-LQDNYLKYDPSVPQNLQIVEMDSNILDLKESFR 255
           I  R +KRD+ IL    ++ KF+ SS  ++N +  D   P+ +Q   ++ N LD + +  
Sbjct: 240 IMKRGKKRDRSILWEELNNGKFEFSSRSEENSVLLDDFTPETVQ--PLEENELDTELNIE 297

Query: 256 YEGE 259
            E +
Sbjct: 298 NEAK 301


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 199 LRERKRDKPILELSKHSKKFDISSLQDNYLKYDPSVPQNLQIVEMDSNILDLKESFRYEG 258
           L E     P ++ S  S K  +S  +++ L        NL + E+ + + ++KE  R  G
Sbjct: 87  LTETTTPSPAVKASPASTKLSVS--ENDRLSIPEITKDNLTLTEIIAKLREMKEPIRLFG 144

Query: 259 EAITAGTLLRW 269
           E+  A T+ R+
Sbjct: 145 ESEEA-TIQRY 154


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 192 PIPLHIALRERKRDKP-ILELSKHSKKFDISSLQDNYLKYDPSVPQNLQIVEMDSNILDL 250
           P+P HI         P + + S    K ++++++ +  +   S+  N  I  M +N+LD 
Sbjct: 628 PLPYHIVYMFSFETSPTVFQTSPEEDKENVNNIKISQPRN--SLQTNGYIEGMANNVLDA 685

Query: 251 KESFRYEGEAITAGTLLRWNQTDTDIYITSESR 283
             +   E  AI+   L  + +  ++IY   + R
Sbjct: 686 SFNVEDESHAISDSELGYFCEDQSNIYEVEDMR 718


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 195 LHIALRERKRDKPILELSKHSKKFDISSLQDNYLKYDPSVPQNL 238
           +++   +RK    I +LS  +K ++  SL++  LK DPS P ++
Sbjct: 473 INLFYEKRKTLAVIPDLSIEAKTYE--SLREQLLKIDPSTPYHI 514


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 83  QQSRLIPYLHANESNHCEIS 102
           QQSR++   HAN+  H E+S
Sbjct: 376 QQSRVLYLFHANKQRHFELS 395


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,371
Number of Sequences: 5004
Number of extensions: 63527
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 5
length of query: 300
length of database: 2,362,478
effective HSP length: 72
effective length of query: 228
effective length of database: 2,002,190
effective search space: 456499320
effective search space used: 456499320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)