Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002475-TA|BGIBMGA002475-PA|IPR000884|Thrombospondin,
type I
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0188 - 6473353-6473432,6473619-6474816 34 0.16
09_02_0546 - 10454404-10455687 33 0.37
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 32 0.49
12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058 31 1.5
01_05_0234 - 19652583-19653101 31 1.5
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405... 30 2.6
10_05_0023 + 8171023-8171782,8172658-8172950 29 3.4
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039... 29 3.4
04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713 29 3.4
07_01_0880 + 7301042-7301548 29 6.0
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975... 28 8.0
>10_02_0188 - 6473353-6473432,6473619-6474816
Length = 425
Score = 33.9 bits (74), Expect = 0.16
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Query: 13 KHTPEWGDWEEWS-ACNADCGYGLRTRTRKCKYRGFVSESACEGAGSQVATCWAGSSCAA 71
KH +++S + N G + RKC+ R + C+G G C + AA
Sbjct: 263 KHQGNTNPRQDYSLSLNPVPGQRNQNEKRKCRVREDICCFNCQGMGHFADKCPRPRNIAA 322
Query: 72 TRDIRSDLCHRQQSRLIPYLHANESNHCEISCVDYAGGSPTNFGALPDGTPCSY 125
+ + + C+++ + +HA S S +D +PT ALP G +
Sbjct: 323 STSVHATPCNQKLAPQRIVIHAARS-----SPIDRVATAPTPASALPQGVNAQF 371
>09_02_0546 - 10454404-10455687
Length = 427
Score = 32.7 bits (71), Expect = 0.37
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 36 RTRTRKCKYRGFVSESACEGAGSQVATCWAGSSCAATRDIRSDLCHRQQSRLIPYLHANE 95
R RKC+ R + C+G G C + AA+ + + C+++ + +HA+
Sbjct: 297 RNEKRKCRVREDICCFNCQGMGHFADKCPKPRNIAASTSVHATPCNQKLAPQRIVIHASR 356
Query: 96 SNHCEISCVDYAGGSPTNFGALPDGTPCSY 125
S S + +PT ALP G +
Sbjct: 357 S-----SPIARVATAPTPASALPQGVNAQF 381
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 215 SKKFDISSLQDNYLKYDPSVPQNLQIVEMDSNILDLKESFRYEGEAITAGTLLRWN 270
++ F +SL + + PS+ + Q + +SN + +F+ E E + L WN
Sbjct: 263 AQNFSYTSLMEQIISSQPSISEVQQEISTESNFVATPRAFQVEDEDLEDNELENWN 318
>12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058
Length = 526
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 17 EWGDWEEWSACNADCGYGLRTRTRKCKYRGFVSESACEGAGSQVATCWAGSSCAATRDIR 76
E GD +E A DC L T +R C+ + E A + A A ++ AA +D+
Sbjct: 5 ERGDGDELIADYVDCLMSLDTNSRSCQNDALILEGAPDDVDDDAA---AAAAAAAEQDVM 61
Query: 77 SD 78
D
Sbjct: 62 RD 63
>01_05_0234 - 19652583-19653101
Length = 172
Score = 30.7 bits (66), Expect = 1.5
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 40 RKCKYRGFVSESACEGAGSQVATCWAGSSCAATRDIRSDLCHRQQSRLIPYLHANESNHC 99
RKC+ R + C+G G C + A+ + + C+ + + +HA+ S
Sbjct: 40 RKCRVREDICCFNCQGMGHFADKCPKPRNITASTSVHATPCNLKLAPQRIVIHASRS--- 96
Query: 100 EISCVDYAGGSPTNFGALPDGTPCSYLRPFDVCFQG-TCVKGQCNSSDTTCNWCPDGYCN 158
S + +PT ALP G + + G +CV + N P+G
Sbjct: 97 --SPIARVATAPTPASALPQGVNAHFQPQQRIVVDGRSCVSPRPTPGQAKGNRPPEGDTK 154
Query: 159 NNT 161
T
Sbjct: 155 QKT 157
>04_04_0632 +
26738969-26739350,26739535-26739543,26739674-26740545,
26743048-26743098,26743966-26744127,26744278-26744519,
26744772-26744859,26744964-26745158
Length = 666
Score = 29.9 bits (64), Expect = 2.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 19 GDWEEWSACNADCGYGLRTRTRKCKYRGFVSESACEGAGSQ-VATCWAGSSCAATRDIRS 77
G+ + W+ NAD G+ R K+ + S++ + G + V W G + + DI
Sbjct: 358 GETDTWTPDNADIDVGIGLRYDYGKF--YASKTFYDPVGRRRVLWGWIGETDSERADILK 415
Query: 78 DLCHRQQSRLIPYLHANES 96
Q S +I L+ANE+
Sbjct: 416 GWASLQVSMIIFILNANEN 434
>10_05_0023 + 8171023-8171782,8172658-8172950
Length = 350
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 53 CEGAGSQVATCWAGSSCAATRDIRSDLCHRQQSRLIPYLHANESNHCEISCVDYAGGSPT 112
CEG G C + AA+ + + C+++ + +HA+ S S +D +PT
Sbjct: 252 CEGMGHFADKCPRPRNIAASTSVHATPCNQKLAPQRIVIHASRS-----SPIDRVATAPT 306
Query: 113 NFGALPDGTPCSY 125
ALP G +
Sbjct: 307 LASALPQGVNAQF 319
>07_03_1193 -
24702135-24702421,24702835-24703160,24703240-24703910,
24704342-24704421,24704515-24704572
Length = 473
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 150 NWCPDGYCN----NNTNTYTRLLGNGWT 173
+W PDGY NN TY +++ GWT
Sbjct: 39 SWTPDGYVAMVTINNYQTYRQIMAPGWT 66
>04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713
Length = 236
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 188 HIATPIPLHIALRERKRDKPILELSKHSKKFDISSLQDNYLKYDPS 233
H+ I L AL +R P+L + + S+ +D + KYDP+
Sbjct: 130 HVKDIIHLRSALHRLRRQGPLLAVIRISRNYDECRKSGHVYKYDPA 175
>07_01_0880 + 7301042-7301548
Length = 168
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 23 EWSACNADCGYGLRTRTRKCKYRGFVSESACEGAGSQVATCWAGS 67
+WS+CN+D ++ +KC+ R S S+C A S W S
Sbjct: 70 QWSSCNSDQPPP-PSKAKKCRRRLSTSSSSCSWASSGGWMSWLTS 113
>04_04_1114 +
30995816-30996229,30997054-30997129,30997493-30997587,
30997729-30997812,30998094-30998181,30998485-30998609,
30998687-30998785,31000089-31000190,31001570-31001680
Length = 397
Score = 28.3 bits (60), Expect = 8.0
Identities = 48/196 (24%), Positives = 74/196 (37%), Gaps = 15/196 (7%)
Query: 89 PYLHANESNHCEISCVDYAGGSPTN--FGALPDGTPCSYLRPFDVCFQGTCVKGQCNSSD 146
P LH N + E A G+P FG D TP SY+ DV + K C+ D
Sbjct: 148 PTLHFNY-RYFETDAPKDAPGAPRQWWFGGGTDLTP-SYIIEEDVKHFHSVQKQACDKFD 205
Query: 147 TTC-----NWCPDGYCNNNTNTYTRLLGNGWTRMTMVPHEAR-QLSIHIA-TPIPLHIAL 199
+ WC D + + N L G + + E + A + +P +I +
Sbjct: 206 PSFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLNFATECADSVVPAYIPI 265
Query: 200 RERKRDKPILELSKHSKKFDISSLQDNYLKYDPSVPQNLQI---VEMDSNILDLKESFRY 256
ER++D P E K ++ + L YD L+ +E L L ++Y
Sbjct: 266 IERRKDTPFTEEHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWQY 325
Query: 257 EGEAITAGTLLR-WNQ 271
+ I + L W Q
Sbjct: 326 DHALILSSQCLTGWRQ 341
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,771,867
Number of Sequences: 37544
Number of extensions: 435310
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 11
length of query: 300
length of database: 14,793,348
effective HSP length: 82
effective length of query: 218
effective length of database: 11,714,740
effective search space: 2553813320
effective search space used: 2553813320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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