GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002475-TA|BGIBMGA002475-PA|IPR000884|Thrombospondin,
type I
         (300 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    30   0.069
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             25   2.0  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    25   2.0  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   3.4  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   3.4  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    24   6.0  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    23   8.0  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    23   8.0  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 30.3 bits (65), Expect = 0.069
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 99  CEISCVDYAGGSPTNFGALPDGTPCSYLRPFDVCFQ--GTCVKGQCNSSDTTCNWCPDGY 156
           CE SC      +P   G      PC   +  ++C    G C+  Q N++  TC+ C  GY
Sbjct: 704 CE-SCAPGYRHNPARGGPFMPCVPCDCNKHAEICDSETGRCIC-QHNTAGDTCDQCAKGY 761

Query: 157 CNN 159
             N
Sbjct: 762 YGN 764



 Score = 27.5 bits (58), Expect = 0.49
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 15/90 (16%)

Query: 80  CHRQQSRLIPYLHANESNHCEISCVDYAGGSPTNFGALPDGT--PCS-YLRPFDVCFQGT 136
           C+R     +  +H     HC+  C+    G P    A P G+   CS Y R  +   +G 
Sbjct: 844 CNRTTGECLKCIHNTAGPHCD-QCLPGHFGDPL---AEPHGSCEECSCYPRGTEQTEKGI 899

Query: 137 ----CVKGQC----NSSDTTCNWCPDGYCN 158
                + G C    N    TCN C +GY N
Sbjct: 900 SICDAINGNCHCKPNVIGRTCNECKNGYWN 929



 Score = 23.4 bits (48), Expect = 8.0
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 46  GFVSESACEGAGSQVATCWAGSSCAATRDIRSDLCHRQQSRLIPY-LHANESNHCE 100
           G+     C+  GS+   C A   C     +  + C R  S    +  H  +  +C+
Sbjct: 392 GYCINCGCDPVGSRSLQCNAEGRCQCKPGVTGEKCDRCDSNYFNFGPHGCQPCNCD 447


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 103 CVDYAGGSPTNFGALPDGTPCS 124
           CV + G  P  +  LP G PC+
Sbjct: 227 CVCFGGQEPEQYVLLPAGPPCA 248


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 133 FQGTCVKGQCNSSDTTCNWCPD 154
           FQ  C+  +C  +D  C WC D
Sbjct: 35  FQKNCI--ECLDADKDCAWCTD 54


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 245 SNILDLKESFRYEGEAITAGTLLRWNQT 272
           +N+LD+ + FR+    +T G  L  N T
Sbjct: 402 ANVLDIDDDFRHNCRPLTPGGTLPHNPT 429


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 236 QNLQIVEMDSNILDLKESFRYEGEAITAGTLLRWNQ 271
           + L+I+++D N+L     F +EG        L++N+
Sbjct: 840 KELEILQLDHNLLTALNGFEFEGLDSLKELFLQYNR 875


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 25  SACNADCGYGLRTRTRKCKYRGFVS 49
           S C  D G+ L+T   + +YRG ++
Sbjct: 386 SCCIGDLGFALKTFGARYEYRGEIT 410


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
          doublesex protein protein.
          Length = 241

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 34 GLRTRTRKCKYRGFVSESACEGAGSQ 59
          GL+   R CKYR    E  C  A  Q
Sbjct: 52 GLKGHKRYCKYRACQCEKCCLTAERQ 77


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
          doublesex protein protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 34 GLRTRTRKCKYRGFVSESACEGAGSQ 59
          GL+   R CKYR    E  C  A  Q
Sbjct: 52 GLKGHKRYCKYRACQCEKCCLTAERQ 77


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.133    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,332
Number of Sequences: 2123
Number of extensions: 15741
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 11
length of query: 300
length of database: 516,269
effective HSP length: 64
effective length of query: 236
effective length of database: 380,397
effective search space: 89773692
effective search space used: 89773692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)