GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002474-TA|BGIBMGA002474-PA|IPR001590|Peptidase M12B,
ADAM/reprolysin
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    30   0.56 
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    27   5.2  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   9.2  

>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 297 GWDATIWLTRSQLGGPSGFAPVGGVCTKTRSAAIDRD 333
           G + T++LT S +GG  G A  GGV +K  S+ +  D
Sbjct: 480 GMNLTLYLTFSSVGGAFGSAIAGGVWSKRLSSRLLHD 516


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 196 FRRPASGVKGLWLELAIVADNT 217
           FRR + G++  WL+ AI AD T
Sbjct: 58  FRRSSEGLEDAWLDSAIPADPT 79


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 246 SLGSNITLVINKLF---LYEDKDIILKYGNIKKSLEAINKWNYRHLMKLPEGSTGWD 299
           SLG+++    N LF   L    +  ++  N     E + K     L++L  G TGWD
Sbjct: 528 SLGNSLDQPANTLFRHNLTASLESAIRSSNASYEPEYVLKRLDARLLELSHGETGWD 584


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,355
Number of Sequences: 5004
Number of extensions: 51497
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 3
length of query: 349
length of database: 2,362,478
effective HSP length: 73
effective length of query: 276
effective length of database: 1,997,186
effective search space: 551223336
effective search space used: 551223336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)