GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002474-TA|BGIBMGA002474-PA|IPR001590|Peptidase M12B,
ADAM/reprolysin
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    31   1.8  
01_07_0094 - 41049644-41050214,41050441-41050688,41050887-41051168     29   5.5  

>08_01_0704 +
           6219530-6219609,6221595-6222243,6222339-6222437,
           6222521-6222616,6222750-6222848,6222929-6223027,
           6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 305 TRSQLGGPSGFAP--VGGVCTKTRSAAIDRDEGLTS 338
           TRS+L G +G     VG +C+KTRS  + R+  L S
Sbjct: 84  TRSELAGANGVVDSNVGDLCSKTRSGLVRRNATLDS 119


>01_07_0094 - 41049644-41050214,41050441-41050688,41050887-41051168
          Length = 366

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 79  KAIRSPYYKEC---QFFTGRVLHEEGSAVTVTECDGQLYGL--LQVGGEEFVLQP 128
           +A+R  +Y  C   +   G   H +GSAVTV + D    GL  L+ GG    + P
Sbjct: 218 QAVRMNFYPPCPRPELVLGLSPHSDGSAVTVLQQDAAFAGLQVLRGGGGWVAVHP 272


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,343,713
Number of Sequences: 37544
Number of extensions: 350723
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 2
length of query: 349
length of database: 14,793,348
effective HSP length: 83
effective length of query: 266
effective length of database: 11,677,196
effective search space: 3106134136
effective search space used: 3106134136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)