GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002474-TA|BGIBMGA002474-PA|IPR001590|Peptidase M12B,
ADAM/reprolysin
         (349 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    73   3e-13
Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical pr...    73   3e-13
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    46   4e-05
U29378-9|AAP40541.1|  975|Caenorhabditis elegans Adamts family p...    37   0.019
U29378-8|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p...    37   0.019
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p...    37   0.019
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    33   0.40 
Z50004-3|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    33   0.40 
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      33   0.40 
Z72502-14|CAA96586.2|  439|Caenorhabditis elegans Hypothetical p...    29   3.7  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 8/150 (5%)

Query: 207 WLELAIVADNTMLKFHGRERVKHYILALMNIVSAIFNDPSLGSNITLVINKLFLYEDKDI 266
           ++E+ +VAD  M ++HGR  ++ Y+L L + V++I+   SL ++I +V+ KL + + ++ 
Sbjct: 281 YVEVLVVADTKMYEYHGRS-LEDYVLTLFSTVASIYRHQSLRASINVVVVKLIVLKTENA 339

Query: 267 ILKYG-NIKKSLEAINKWNYRHLMKLPEGSTGWDATIWLTRSQLGGPSG------FAPVG 319
             +   N +++L+   +W   +           D  I LTR  +    G       A +G
Sbjct: 340 GPRITQNAQQTLQDFCRWQQYYNDPDDSSVQHHDVAILLTRKDICRSQGKCDTLGLAELG 399

Query: 320 GVCTKTRSAAIDRDEGLTSAFVIAHELAHL 349
            +C   +S AI  D GL++AF IAHEL H+
Sbjct: 400 TMCDMQKSCAIIEDNGLSAAFTIAHELGHV 429


>Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 8/150 (5%)

Query: 207 WLELAIVADNTMLKFHGRERVKHYILALMNIVSAIFNDPSLGSNITLVINKLFLYEDKDI 266
           ++E+ +VAD  M ++HGR  ++ Y+L L + V++I+   SL ++I +V+ KL + + ++ 
Sbjct: 281 YVEVLVVADTKMYEYHGRS-LEDYVLTLFSTVASIYRHQSLRASINVVVVKLIVLKTENA 339

Query: 267 ILKYG-NIKKSLEAINKWNYRHLMKLPEGSTGWDATIWLTRSQLGGPSG------FAPVG 319
             +   N +++L+   +W   +           D  I LTR  +    G       A +G
Sbjct: 340 GPRITQNAQQTLQDFCRWQQYYNDPDDSSVQHHDVAILLTRKDICRSQGKCDTLGLAELG 399

Query: 320 GVCTKTRSAAIDRDEGLTSAFVIAHELAHL 349
            +C   +S AI  D GL++AF IAHEL H+
Sbjct: 400 TMCDMQKSCAIIEDNGLSAAFTIAHELGHV 429


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 21/162 (12%)

Query: 206 LWLELAIVADNTML----KFHGR---ERVKHYILALMNIVSAIFNDPSLGSNITLVINKL 258
           L +ELA+ AD+ M     K +G+   E +  +I+A++N +  ++    L   I + I + 
Sbjct: 133 LTVELAVFADDAMWDHFKKMYGKAAEENMHTFIMAVVNNIDVLYTQRLLQPRINIKIVRY 192

Query: 259 FLYEDKDIILKY-----GNIKKSLEAINKWNYRHLMKLPEGSTG--WDATIW-----LTR 306
            + ++   ++       G++ + L+A  +  Y++ +  P  +    WD  +      L R
Sbjct: 193 EILKNIPHLMNARKHSNGDVDRLLDAFCQ--YQNEINPPNDADPRHWDHALLFSGYDLHR 250

Query: 307 SQLGGPSGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAH 348
           + +   +G+APV G+C+  RS  I+      S FV+ HE+ H
Sbjct: 251 NGVKTVAGYAPVKGMCSGVRSCTINEGLDFGSVFVVTHEMGH 292


>U29378-9|AAP40541.1|  975|Caenorhabditis elegans Adamts family
           protein 2, isoform c protein.
          Length = 975

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 35/271 (12%)

Query: 98  HEEGSAV--TVTECDGQLYGLLQVGGEEFVLQPTRTQEKHVLRRRDVTHSERSAEYNLTG 155
           H  G  V   ++ CDG++ G +   GE  V+ P      H  +R     +E  A      
Sbjct: 110 HHYGEKVYAAISNCDGRIKGTVIDDGEIIVVHPFPDHHAHRSKRA----TENGAHVVYKR 165

Query: 156 DTVIXXXXXXXXXXXXXPTSHVHPRHSDHSDKEYFHDMHLFRRPASGVKGLWLELAIVAD 215
           +T+                  V        +   F D+ +  +  +    L +ELA+  D
Sbjct: 166 ETLAGEPKDFCGLDNV-----VTEESLVEDESAIFEDVFVTGQRLTQQSDLIVELAVFVD 220

Query: 216 NTMLKF----HGR---ERVKHYILALMNIVSAIFNDPSLGSNITL-VINKLFLYEDKDII 267
             + +     HG     +++ Y L L+N +  ++  P+    +T  VI    L      +
Sbjct: 221 ENLWRHFSSKHGGMADRKLQDYTLTLLNNIQIMYYQPTASPPLTFRVIRYEVLTRQPSAL 280

Query: 268 LKY----GNIKKSLEAINKWNYRHLMKLPEGSTGWDATIWLTRSQL---GGP---SGFAP 317
             Y    GN +  L+   ++  R+L         WD  I LT   +    G    SG A 
Sbjct: 281 AGYLHNHGNAQMYLDRFCRYQ-RNL-----AVRDWDHAIMLTGYDIHRGAGSRSISGIAR 334

Query: 318 VGGVCTKTRSAAIDRDEGLTSAFVIAHELAH 348
           + G+C    +  +      TSAF+  HEL H
Sbjct: 335 LDGMCDPWNTCTLAEGLDFTSAFIGTHELGH 365


>U29378-8|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
           protein 2, isoform a protein.
          Length = 1020

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 35/271 (12%)

Query: 98  HEEGSAV--TVTECDGQLYGLLQVGGEEFVLQPTRTQEKHVLRRRDVTHSERSAEYNLTG 155
           H  G  V   ++ CDG++ G +   GE  V+ P      H  +R     +E  A      
Sbjct: 110 HHYGEKVYAAISNCDGRIKGTVIDDGEIIVVHPFPDHHAHRSKRA----TENGAHVVYKR 165

Query: 156 DTVIXXXXXXXXXXXXXPTSHVHPRHSDHSDKEYFHDMHLFRRPASGVKGLWLELAIVAD 215
           +T+                  V        +   F D+ +  +  +    L +ELA+  D
Sbjct: 166 ETLAGEPKDFCGLDNV-----VTEESLVEDESAIFEDVFVTGQRLTQQSDLIVELAVFVD 220

Query: 216 NTMLKF----HGR---ERVKHYILALMNIVSAIFNDPSLGSNITL-VINKLFLYEDKDII 267
             + +     HG     +++ Y L L+N +  ++  P+    +T  VI    L      +
Sbjct: 221 ENLWRHFSSKHGGMADRKLQDYTLTLLNNIQIMYYQPTASPPLTFRVIRYEVLTRQPSAL 280

Query: 268 LKY----GNIKKSLEAINKWNYRHLMKLPEGSTGWDATIWLTRSQL---GGP---SGFAP 317
             Y    GN +  L+   ++  R+L         WD  I LT   +    G    SG A 
Sbjct: 281 AGYLHNHGNAQMYLDRFCRYQ-RNL-----AVRDWDHAIMLTGYDIHRGAGSRSISGIAR 334

Query: 318 VGGVCTKTRSAAIDRDEGLTSAFVIAHELAH 348
           + G+C    +  +      TSAF+  HEL H
Sbjct: 335 LDGMCDPWNTCTLAEGLDFTSAFIGTHELGH 365


>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
           protease protein.
          Length = 1020

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 60/271 (22%), Positives = 100/271 (36%), Gaps = 35/271 (12%)

Query: 98  HEEGSAV--TVTECDGQLYGLLQVGGEEFVLQPTRTQEKHVLRRRDVTHSERSAEYNLTG 155
           H  G  V   ++ CDG++ G +   GE  V+ P      H  +R     +E  A      
Sbjct: 110 HHYGEKVYAAISNCDGRIKGTVIDDGEIIVVHPFPDHHAHRSKRA----TENGAHVVYKR 165

Query: 156 DTVIXXXXXXXXXXXXXPTSHVHPRHSDHSDKEYFHDMHLFRRPASGVKGLWLELAIVAD 215
           +T+                  V        +   F D+ +  +  +    L +ELA+  D
Sbjct: 166 ETLAGEPKDFCGLDNV-----VTEESLVEDESAIFEDVFVTGQRLTQQSDLIVELAVFVD 220

Query: 216 NTMLKF----HGR---ERVKHYILALMNIVSAIFNDPSLGSNITL-VINKLFLYEDKDII 267
             + +     HG     +++ Y L L+N +  ++  P+    +T  VI    L      +
Sbjct: 221 ENLWRHFSSKHGGMADRKLQDYTLTLLNNIQIMYYQPTASPPLTFRVIRYEVLTRQPSAL 280

Query: 268 LKY----GNIKKSLEAINKWNYRHLMKLPEGSTGWDATIWLTRSQL---GGP---SGFAP 317
             Y    GN +  L+   ++  R+L         WD  I LT   +    G    SG A 
Sbjct: 281 AGYLHNHGNAQMYLDRFCRYQ-RNL-----AVRDWDHAIMLTGYDIHRGAGSRSISGIAR 334

Query: 318 VGGVCTKTRSAAIDRDEGLTSAFVIAHELAH 348
           + G+C    +  +      TSAF+  HEL H
Sbjct: 335 LDGMCDPWNTCTLAEGLDFTSAFIGTHELGH 365


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 208 LELAIVADNTMLKFHGRERVK-------HYILALMNIVSAIFNDPSLGSNITLVINKLFL 260
           LE+ +  D+ + +   RE ++        + LAL+N V  ++   +L  N+ +VI +  +
Sbjct: 235 LEIGLFLDSKLFEHFEREYIQDAEQHLLEFSLALINNVHVLYQQDTLTPNLDIVIVRYEM 294

Query: 261 YEDKDIIL-----KYGNIKKSLEAINKWNYRHLMKLPE--GSTGWDATIWLTRSQL---- 309
           +  +   L     K G  +  L+A  ++   H+    +      +D  + LT   +    
Sbjct: 295 WRTQPSALSTGVHKNGQAQSLLDAFCRYQ-AHMNPGTDLTDMNHYDHGVLLTGYDIYHTT 353

Query: 310 GGPSGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAH 348
              +G APV  +C    + ++     L  +FV+AHE+ H
Sbjct: 354 TSVAGVAPVARMCDPLFACSLVEGLHLGRSFVLAHEMGH 392


>Z50004-3|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 208 LELAIVADNTMLKFHGRERVK-------HYILALMNIVSAIFNDPSLGSNITLVINKLFL 260
           LE+ +  D+ + +   RE ++        + LAL+N V  ++   +L  N+ +VI +  +
Sbjct: 235 LEIGLFLDSKLFEHFEREYIQDAEQHLLEFSLALINNVHVLYQQDTLTPNLDIVIVRYEM 294

Query: 261 YEDKDIIL-----KYGNIKKSLEAINKWNYRHLMKLPE--GSTGWDATIWLTRSQL---- 309
           +  +   L     K G  +  L+A  ++   H+    +      +D  + LT   +    
Sbjct: 295 WRTQPSALSTGVHKNGQAQSLLDAFCRYQ-AHMNPGTDLTDMNHYDHGVLLTGYDIYHTT 353

Query: 310 GGPSGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAH 348
              +G APV  +C    + ++     L  +FV+AHE+ H
Sbjct: 354 TSVAGVAPVARMCDPLFACSLVEGLHLGRSFVLAHEMGH 392


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 208 LELAIVADNTMLKFHGRERVK-------HYILALMNIVSAIFNDPSLGSNITLVINKLFL 260
           LE+ +  D+ + +   RE ++        + LAL+N V  ++   +L  N+ +VI +  +
Sbjct: 235 LEIGLFLDSKLFEHFEREYIQDAEQHLLEFSLALINNVHVLYQQDTLTPNLDIVIVRYEM 294

Query: 261 YEDKDIIL-----KYGNIKKSLEAINKWNYRHLMKLPE--GSTGWDATIWLTRSQL---- 309
           +  +   L     K G  +  L+A  ++   H+    +      +D  + LT   +    
Sbjct: 295 WRTQPSALSTGVHKNGQAQSLLDAFCRYQ-AHMNPGTDLTDMNHYDHGVLLTGYDIYHTT 353

Query: 310 GGPSGFAPVGGVCTKTRSAAIDRDEGLTSAFVIAHELAH 348
              +G APV  +C    + ++     L  +FV+AHE+ H
Sbjct: 354 TSVAGVAPVARMCDPLFACSLVEGLHLGRSFVLAHEMGH 392


>Z72502-14|CAA96586.2|  439|Caenorhabditis elegans Hypothetical
           protein C08B6.3 protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 183 DHSDKEYFHDMHLFRRPASGVKGLWLELAIVADNTMLKFHGRERVKHYILALMNIVSAIF 242
           D + +EY  ++     P  G +  WL LA + ++   K  G      YI  +    SA+ 
Sbjct: 166 DRTQREYKRELSFCMSPIYGKEAKWLLLAEIIEH--YKLQGMTHFYFYIFHIDEYSSAML 223

Query: 243 ND 244
           ND
Sbjct: 224 ND 225


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,609,003
Number of Sequences: 27539
Number of extensions: 282666
Number of successful extensions: 524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 13
length of query: 349
length of database: 12,573,161
effective HSP length: 82
effective length of query: 267
effective length of database: 10,314,963
effective search space: 2754095121
effective search space used: 2754095121
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)